HHsearch alignment for GI: 254780684 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=1152.56 Aligned_cols=412 Identities=44% Similarity=0.706 Sum_probs=394.2
Q ss_pred CEEEEEEEEEEECCEEEEECCCCCCCCCCEEEEEC----CCCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-C
Q ss_conf 21201289999525899982688887351899956----996079999974199799998048557467888997288-5
Q gi|254780684|r 19 LVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQG----KNSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-F 93 (438)
Q Consensus 19 l~~~~G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~----~~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~ 93 (438)
T Consensus 2 ~~~~~Grv~~v~G~Ll~A~lP--~a~vGELC~i~~nW~~~~~~~~AEVVGf~~~~alLsPlg~~~G~~~g~~V~p~g~~~ 79 (430)
T TIGR02546 2 LVRVRGRVTEVSGTLLKAVLP--GARVGELCLIKRNWPRDPSQLLAEVVGFTGDEALLSPLGELSGISPGSEVIPTGRPL 79 (430)
T ss_pred CCEEEEEEEEECCEEEEEECC--CEEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCE
T ss_conf 831476677521338999817--606740345522378985661378998727867760266533256566786258420
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCC------EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 552466688654307763047887775553------01211254333000133110011124587520022358503752
Q gi|254780684|r 94 RISPSACWCGRVINALGKPIDGDDSLGKGD------LSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVF 167 (438)
Q Consensus 94 ~i~vG~~lLGRViD~lG~PlDg~~~l~~~~------~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIf 167 (438)
T Consensus 80 ~i~vGe~LLGRVlDG~GrPlD~~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIF 159 (430)
T TIGR02546 80 SIRVGEALLGRVLDGFGRPLDGKGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIF 159 (430)
T ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 22106000320045657703788878755643024645765678104876753346510146675434403665305787
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66788999999998740789838993124652238899998642-77553289841577880344444456777888864
Q gi|254780684|r 168 AGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFS 246 (438)
Q Consensus 168 g~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr 246 (438)
T Consensus 160 A~aG~GKSTLL~~i~~g~~ADv~V~ALIGERGREVREFiE~~lg~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFR 239 (430)
T TIGR02546 160 AGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHLLGEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFR 239 (430)
T ss_pred ECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 08886166899998618988789986027876047888752078305242489960798667999999878879999999
Q ss_pred HCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHH
Q ss_conf 26798899970989999998766540477843236632455420044444311367885235543334216764202789
Q gi|254780684|r 247 SKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIAD 326 (438)
Q Consensus 247 ~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~ 326 (438)
T Consensus 240 DQGk~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~--~e~GSITA~YTVLvEgDd~~dP~AD 317 (430)
T TIGR02546 240 DQGKRVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGN--SEKGSITALYTVLVEGDDMNDPIAD 317 (430)
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCC--CCCCCEEEEEEEEECCCCCCCCHHH
T ss_conf 73990798840277999998778875378400257787366507501227861--1296253456787627779984366
Q ss_pred HHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99861260898704277589713114456400022120899999999999999999999999998523446999899999
Q gi|254780684|r 327 SVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKA 406 (438)
Q Consensus 327 ~~~~i~DG~i~L~r~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~ 406 (438)
T Consensus 318 EvRSILDGHIvLsR~LA~~~HyPAIDVLaS~SRvm~~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~lGEY~~G~D~~~D~A 397 (430)
T TIGR02546 318 EVRSILDGHIVLSRKLAERNHYPAIDVLASLSRVMSQVVSKEHRRAAGKLRRLLAKYKEVELLIRLGEYQPGSDPETDKA 397 (430)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 55445423689989997416886356652366423677887899999999999999999988987448889989889999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHH-HHHHHH
Q ss_conf 9999999998359988899976-899999
Q gi|254780684|r 407 VHQVPIIYDFLKQSPSDLSSED-VFQEIT 434 (438)
Q Consensus 407 i~~~~~i~~fl~Q~~~e~~~~~-~~~~~~ 434 (438)
T Consensus 398 ~~~~~~i~~FL~Q~~~E~~~~e~tl~~L~ 426 (430)
T TIGR02546 398 IDKIDAIRAFLRQSTDEKSSYEETLEQLH 426 (430)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 97577889871488877789899999999