HHsearch alignment for GI: 254780684 and conserved domain: TIGR03496
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=988.46 Aligned_cols=408 Identities=42% Similarity=0.697 Sum_probs=393.8
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
T Consensus 1 GrV~~V~G~vIea~g~--~~~IGe~c~I~~~~g~~i~aEVVgf~~~~v~l~~~~~~~Gi~~G~~V~~tg~~~~v~vg~~l 78 (411)
T TIGR03496 1 GRLTRVVGLVLEAVGL--RAPVGSRCEIESADGDPIEAEVVGFSGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSL 78 (411)
T ss_pred CEEEEEEEEEEEEECC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHH
T ss_conf 9799998018999737--99978889999389978999999972997999986688788889999978996667638765
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
T Consensus 79 LGRVid~lG~PlDg~~~~~~~-~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pig~GQR~gIf~g~GvGKs~Ll~~i 157 (411)
T TIGR03496 79 LGRVIDGLGRPLDGKGPLDAG-ERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRIGIFAGSGVGKSVLLGMM 157 (411)
T ss_pred CCCEECCCCCCCCCCCCCCCC-CEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 378857888765777888878-4565007996814317877621158346634466146863132279998677999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r 182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
T Consensus 158 a~~~~adv~VialIGeR~rev~efie~~~~~~~~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dslt 237 (411)
T TIGR03496 158 ARYTEADVVVVGLIGERGREVKEFIEEILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 75348988999532530589999999862225652169999438899899999999999999999966994699974688
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r 340 (438)
T Consensus 238 r~A~A~REisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~~V~~~~dD~~dpi~d~~~~ilDG~ivLsr 317 (411)
T TIGR03496 238 RFAMAQREIALAIGEPPATKGYPPSVFAKLPRLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSR 317 (411)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHEEEEEEECH
T ss_conf 99999989998737999866788538888778887436899989868773589757987566457765651404899939
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 (438)
Q Consensus 341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~ 420 (438)
T Consensus 318 ~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~ 397 (411)
T TIGR03496 318 ELAEQGHYPAIDILASISRVMPDVVSPEHLQLARRFKQLLSRYQENRDLISIGAYQPGSDPELDQAIALYPRIEAFLQQG 397 (411)
T ss_pred HHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89967999971864056442332168999999999999999989999999974723699989999999799999972899
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 88899976899999870
Q gi|254780684|r 421 PSDLSSEDVFQEITKKL 437 (438)
Q Consensus 421 ~~e~~~~~~~~~~~~~l 437 (438)
T Consensus 398 ~~e~~~---~~~~~~~l 411 (411)
T TIGR03496 398 MRERAS---FEESLEAL 411 (411)
T ss_pred CCCCCC---HHHHHHHC
T ss_conf 999979---99999649