HHsearch alignment for GI: 254780684 and conserved domain: TIGR03497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=964.37 Aligned_cols=406 Identities=43% Similarity=0.681 Sum_probs=389.5
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
T Consensus 1 GrV~~i~G~~iev~g~--~~~iGe~c~I~~~~g~~i~aEVv~~~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP--KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CEEEEEEEEEEEEEEC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCC
T ss_conf 9899998279999807--99856759999489988999999982997999993698788999999989997478868430
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
T Consensus 79 LGRV~d~~G~PlDg~~~~~~-~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~i 157 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPIIG-EEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157 (413)
T ss_pred CCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 56887767665589867777-61144446899634406788342038654216576113754421058998776999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r 182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
T Consensus 158 a~~~~adv~Vi~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dslt 237 (413)
T TIGR03497 158 ARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 98743785238886332289999999863125642159998458788799988774632789999867996899973712
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r 340 (438)
T Consensus 238 r~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~ERag~--~~~GSIT~~~~v~~~~dD~tdPi~d~~~si~DG~ivLsr 315 (413)
T TIGR03497 238 RFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSR 315 (413)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCEEEEECH
T ss_conf 988999999986589998878685499887898886138--999854667789712887677716667575061899868
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 (438)
Q Consensus 341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~ 420 (438)
T Consensus 316 ~la~~g~yPaIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~ 395 (413)
T TIGR03497 316 ELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQG 395 (413)
T ss_pred HHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89866999981864246553431156999999999999999889999999962866799988999999899999973899
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 88899976899999870
Q gi|254780684|r 421 PSDLSSEDVFQEITKKL 437 (438)
Q Consensus 421 ~~e~~~~~~~~~~~~~l 437 (438)
T Consensus 396 ~~e~~~~~---~t~~~l 409 (413)
T TIGR03497 396 IDEKFTFE---ETVQLL 409 (413)
T ss_pred CCCCCCHH---HHHHHH
T ss_conf 99997999---999999