HHsearch alignment for GI: 254780684 and conserved domain: TIGR03497

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00  E-value=0  Score=964.37  Aligned_cols=406  Identities=43%  Similarity=0.681  Sum_probs=389.5

Q ss_pred             EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf             2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r   24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW  101 (438)
Q Consensus        24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l  101 (438)
T Consensus         1 GrV~~i~G~~iev~g~--~~~iGe~c~I~~~~g~~i~aEVv~~~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~l   78 (413)
T TIGR03497         1 GKVTRVIGLTIESKGP--KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGL   78 (413)
T ss_pred             CEEEEEEEEEEEEEEC--CCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCC
T ss_conf             9899998279999807--99856759999489988999999982997999993698788999999989997478868430


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r  102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF  181 (438)
Q Consensus       102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i  181 (438)
T Consensus        79 LGRV~d~~G~PlDg~~~~~~-~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~i  157 (413)
T TIGR03497        79 LGRVLDGLGRPLDGEGPIIG-EEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI  157 (413)
T ss_pred             CCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             56887767665589867777-61144446899634406788342038654216576113754421058998776999999


Q ss_pred             HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf             740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r  182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT  260 (438)
Q Consensus       182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t  260 (438)
T Consensus       158 a~~~~adv~Vi~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dslt  237 (413)
T TIGR03497       158 ARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVT  237 (413)
T ss_pred             HHHHCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             98743785238886332289999999863125642159998458788799988774632789999867996899973712


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf             99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r  261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR  340 (438)
Q Consensus       261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r  340 (438)
T Consensus       238 r~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~ERag~--~~~GSIT~~~~v~~~~dD~tdPi~d~~~si~DG~ivLsr  315 (413)
T TIGR03497       238 RFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSR  315 (413)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCEEEEECH
T ss_conf             988999999986589998878685499887898886138--999854667789712887677716667575061899868


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r  341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS  420 (438)
Q Consensus       341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~  420 (438)
T Consensus       316 ~la~~g~yPaIdvl~S~SR~~~~~~~~~h~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~  395 (413)
T TIGR03497       316 ELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQG  395 (413)
T ss_pred             HHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             89866999981864246553431156999999999999999889999999962866799988999999899999973899


Q ss_pred             CCCCCCHHHHHHHHHHC
Q ss_conf             88899976899999870
Q gi|254780684|r  421 PSDLSSEDVFQEITKKL  437 (438)
Q Consensus       421 ~~e~~~~~~~~~~~~~l  437 (438)
T Consensus       396 ~~e~~~~~---~t~~~l  409 (413)
T TIGR03497       396 IDEKFTFE---ETVQLL  409 (413)
T ss_pred             CCCCCCHH---HHHHHH
T ss_conf             99997999---999999