HHsearch alignment for GI: 254780684 and conserved domain: TIGR03498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=981.49 Aligned_cols=413 Identities=53% Similarity=0.875 Sum_probs=397.5
Q ss_pred EEEEEEECCEEEEECCCCCCCCCCEEEEECC-CCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCC-CEEECCHHH
Q ss_conf 2899995258999826888873518999569-96079999974199799998048557467888997288-555246668
Q gi|254780684|r 24 GYISSITSVYYTVTCLSQYVCLGDFVVHQGK-NSDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGR-FRISPSACW 101 (438)
Q Consensus 24 G~V~~V~G~ii~v~Gl~~~v~iGelv~i~~~-~~~v~geVi~~~~~~~~l~~~~~~~gI~~G~~V~~~g~-~~i~vG~~l 101 (438)
T Consensus 1 GrV~~I~G~viev~g~~~~~~iGe~c~I~~~~g~~~~aEVvg~~~~~v~l~~~~~t~Gi~~G~~V~~tg~~~~v~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCHHH
T ss_conf 98999978399998156667768889999199988999999981998999990798898999999968997488817422
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86543077630478877755530121125433300013311001112458752002235850375266788999999998
Q gi|254780684|r 102 CGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 (438)
Q Consensus 102 LGRViD~lG~PlDg~~~l~~~~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i 181 (438)
T Consensus 81 LGRVid~~G~PlDg~g~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pig~GQRigIfgg~GvGKt~Ll~~i 160 (418)
T TIGR03498 81 LGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRKRVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSML 160 (418)
T ss_pred CCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 05175446763578999877756876516899822106888743157602120155025766411378999888999999
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 740789838993124652238899998642-7755328984157788034444445677788886426798899970989
Q gi|254780684|r 182 ARSDCFDKVIISLVGERGREVREFIEDYLG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSIT 260 (438)
Q Consensus 182 ~~~~~~dv~V~alIGeR~rev~efi~~~~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~t 260 (438)
T Consensus 161 ~~~~~adv~V~aliGeRgrEv~efi~~~~~~~~l~~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dslt 240 (418)
T TIGR03498 161 ARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 87507986899883026899999999865315644269999448898788888887877899999867983899955725
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 99999876654047784323663245542004444431136788523554333421676420278999861260898704
Q gi|254780684|r 261 RFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 261 r~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r 340 (438)
T Consensus 241 r~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr 320 (418)
T TIGR03498 241 RFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDR 320 (418)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEECH
T ss_conf 88999999998658999867788417777268786513689998569999999633888677617777676263899848
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27758971311445640002212089999999999999999999999999852344699989999999999999983599
Q gi|254780684|r 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 (438)
Q Consensus 341 ~la~~g~~Paid~~~S~SR~~~~~~~~~~~~~~~~~~~~l~~y~~~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~ 420 (438)
T Consensus 321 ~la~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~ 400 (418)
T TIGR03498 321 AIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQG 400 (418)
T ss_pred HHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89867999970885266444854356999999999999999889999999974866799988999999799999970899
Q ss_pred CCCCCCHH-HHHHHHHH
Q ss_conf 88899976-89999987
Q gi|254780684|r 421 PSDLSSED-VFQEITKK 436 (438)
Q Consensus 421 ~~e~~~~~-~~~~~~~~ 436 (438)
T Consensus 401 ~~e~~~~~~~~~~l~~i 417 (418)
T TIGR03498 401 PDEPTSLQDPFADLAAI 417 (418)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 98998999999999976