HHsearch alignment for GI: 254780684 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.34 E-value=0.1 Score=31.42 Aligned_cols=104 Identities=25% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEE
Q ss_conf 001112458752002--235850375266788999999998740-78983899312465223889999864277-55328
Q gi|254780684|r 143 KGFKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARS-DCFDKVIISLVGERGREVREFIEDYLGDN-LKKSV 218 (438)
Q Consensus 143 e~L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~-~~~dv~V~alIGeR~rev~efi~~~~~~~-l~~tv 218 (438)
T Consensus 62 ~R~~Tgi~ElDRVLGGGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~--QIk~RA~RLg~~~~~l 139 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE--QIKLRADRLGISTENL 139 (372)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH--HHHHHHHHHCCCCCCC
T ss_conf 54447836665400577306717998259988688999999999986399389982456789--9998999858788772
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Q ss_conf 9841577880344444456777888864267988999709899
Q gi|254780684|r 219 VVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITR 261 (438)
Q Consensus 219 vv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr 261 (438)
T Consensus 140 ~l~set~le------------~Il~~i~-~~kP~~lIIDSIQT 169 (372)
T cd01121 140 YLLAETNLE------------DILASIE-ELKPDLVIIDSIQT 169 (372)
T ss_pred EEEECCCHH------------HHHHHHH-HHCCCEEEEECHHH
T ss_conf 788435699------------9999999-71998899956220