HHsearch alignment for GI: 254780684 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00043 Score=48.86 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHCC--------CCCEEEEECCCCC---HHHHHHHHHHHC
Q ss_conf 1112458752002--23585037526678899999999874078--------9838993124652---238899998642
Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSDC--------FDKVIISLVGERG---REVREFIEDYLG 211 (438)
Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~--------~dv~V~alIGeR~---rev~efi~~~~~ 211 (438)
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyId-tE~~f~~~Rl~qia~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID-TEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHHHHHHHCC
T ss_conf 988857899650799647879999999998499999999999842475367896299995-3677588999999997134
Q ss_pred --CC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf --77-5532898415778803444444567778888642679889997098999999
Q gi|254780684|r 212 --DN-LKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHS 265 (438)
Q Consensus 212 --~~-l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A 265 (438)
T Consensus 80 ~~~~~l~~-i~~~~~~~~~~l~~~-----l~~l~~~l~~~~~v~LvVIDSia~l~r~ 130 (235)
T cd01123 80 DPEEVLDN-IYVARAYNSDHQLQL-----LEELEAILIESSRIKLVIVDSVTALFRA 130 (235)
T ss_pred CHHHHHCC-EEEECCCCHHHHHHH-----HHHHHHHHHCCCCCEEEEEEECHHHHHH
T ss_conf 72454225-479637999999999-----9999998730377239999610455566