HHsearch alignment for GI: 254780684 and conserved domain: cd01134

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00  E-value=0  Score=636.10  Aligned_cols=237  Identities=29%  Similarity=0.457  Sum_probs=226.1

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf             30121125433300013311001112458752002235850375266788999999998740789838993124652238
Q gi|254780684|r  123 DLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREV  202 (438)
Q Consensus       123 ~~~~~i~~~~p~p~~R~~i~e~L~TGIr~ID~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev  202 (438)
T Consensus       120 ~q~WPVr~prP-v~er~~~~~PL~TGir~ID~l~Pig~Gqr~~I~g~~g~GKT~l~~~i~k~~~~dv~Vyv~iGeRg~ev  198 (369)
T cd01134         120 VQKWPVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEM  198 (369)
T ss_pred             EEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHH
T ss_conf             87077566775-11138999862653568874253214764677668776899999999853799889999971141899


Q ss_pred             HHHHHHH-------HC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf             8999986-------42-775532898415778803444444567778888642679889997098999999876654047
Q gi|254780684|r  203 REFIEDY-------LG-DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSG  274 (438)
Q Consensus       203 ~efi~~~-------~~-~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~g  274 (438)
T Consensus       199 ~e~l~~f~el~~~~~g~~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~  278 (369)
T cd01134         199 TEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLE  278 (369)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf             99999867741333466410203687427779988998889899999999996898879980758999999889988638


Q ss_pred             CCCCCCCCCHHHHHHCCHHHHHHHCCC-----CCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCC
Q ss_conf             784323663245542004444431136-----788523554333421676420278999861260898704277589713
Q gi|254780684|r  275 ELPVARGYPTSVFSELPRLLERIGPSE-----KEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYP  349 (438)
Q Consensus       275 e~P~~~gyp~~~~~~~~~l~ERag~~~-----~~~GSiT~~~~v~~~~dd~~~pi~~~~~~i~DG~i~L~r~la~~g~~P  349 (438)
T Consensus       279 e~P~~egYP~~l~s~l~~l~ERag~~~~~~~~~~~GSiT~~~~V~~~ggD~s~pI~~~~~si~d~~i~L~~~La~~g~~P  358 (369)
T cd01134         279 EMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFP  358 (369)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCEEEEECHHHHHCCCCC
T ss_conf             99876571931998888998721443236899998117789899756988677578888766215889858898679999


Q ss_pred             CCCCCCCCCCC
Q ss_conf             11445640002
Q gi|254780684|r  350 PVDPLASVSRL  360 (438)
Q Consensus       350 aid~~~S~SR~  360 (438)
T Consensus       359 AId~~~S~Sry  369 (369)
T cd01134         359 SINWLISYSKY  369 (369)
T ss_pred             CCCCCCCCCCC
T ss_conf             71874366588