HHsearch alignment for GI: 254780684 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.14 E-value=0.0014 Score=45.02 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHHHHHHHHCCC--------CCEEEEECCCCCHHHHHHHHHHHC---
Q ss_conf 1112458752002--235850375266788999999998740789--------838993124652238899998642---
Q gi|254780684|r 145 FKTGIRVIDIFTP--LCHGQRIGVFAGSGIGKSTLLSMFARSDCF--------DKVIISLVGERGREVREFIEDYLG--- 211 (438)
Q Consensus 145 L~TGIr~ID~l~p--ig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~--------dv~V~alIGeR~rev~efi~~~~~--- 211 (438)
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDt-E~~f-~~~rl~~i~~~~~ 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT-EGAF-RPERLVQLAVRFG 78 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCC-CHHHHHHHHHHHC
T ss_conf 9887478998857998888399999999998999999999998542211699961999955-7753-1999999987603
Q ss_pred ---CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf ---7755328984157788034444445677788886426798899970989999
Q gi|254780684|r 212 ---DNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 (438)
Q Consensus 212 ---~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iAEyfr~~G~~Vll~~Ds~tr~a 263 (438)
T Consensus 79 ~~~~~~l~~i~~~~~~~-~-e~~~----~~~~~l~~~~~~~~v~liViDSi~al~ 127 (226)
T cd01393 79 LDPEEVLDNIYVARPYN-G-EQQL----EIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred CCHHHHHHHEEEECCCC-H-HHHH----HHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf 26677643336843799-9-9999----999999987524784289993220011