HHsearch alignment for GI: 254780684 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.61 E-value=0.055 Score=33.47 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=28.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 5200223585037526678899999999874078
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDC 186 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~ 186 (438)
T Consensus 18 ~vsl~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~ 51 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3389988998999998999739999999967987