HHsearch alignment for GI: 254780684 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.041 Score=34.40 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.9
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 520022358503752667889999999987407
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
T Consensus 25 ~is~~i~~Ge~~~llGpnGaGKSTLl~~l~g~~ 57 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 838899288399999999998899999983798