HHsearch alignment for GI: 254780684 and conserved domain: cd03236

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.72  E-value=0.028  Score=35.56  Aligned_cols=28  Identities=39%  Similarity=0.522  Sum_probs=24.2

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             3585037526678899999999874078
Q gi|254780684|r  159 CHGQRIGVFAGSGIGKSTLLSMFARSDC  186 (438)
Q Consensus       159 g~GQR~gIfg~~GvGKt~Ll~~i~~~~~  186 (438)
T Consensus        24 k~GEi~gLiGpNGaGKSTLlk~i~Gll~   51 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             8980999989999709999999967986