HHsearch alignment for GI: 254780684 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.88 E-value=0.081 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 200223585037526678899999999874
Q gi|254780684|r 154 IFTPLCHGQRIGVFAGSGIGKSTLLSMFAR 183 (438)
Q Consensus 154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~ 183 (438)
T Consensus 14 isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~ 43 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 487888998999999999989999998887