HHsearch alignment for GI: 254780684 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.68  E-value=0.05  Score=33.78  Aligned_cols=28  Identities=32%  Similarity=0.220  Sum_probs=23.6

Q ss_conf             2002235850375266788999999998
Q gi|254780684|r  154 IFTPLCHGQRIGVFAGSGIGKSTLLSMF  181 (438)
Q Consensus       154 ~l~pig~GQR~gIfg~~GvGKt~Ll~~i  181 (438)
T Consensus        14 vsl~i~~G~~~aIiG~sGsGKSTLl~~~   41 (261)
T cd03271          14 IDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_conf             5889889999999879998699999999