HHsearch alignment for GI: 254780684 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.0076 Score=39.75 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=29.9
Q ss_pred HHH-HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 587-520022358503752667889999999987407
Q gi|254780684|r 150 RVI-DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSD 185 (438)
Q Consensus 150 r~I-D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~ 185 (438)
T Consensus 18 ~al~~vsl~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9996718898799899999999957999999997599