HHsearch alignment for GI: 254780684 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.005 Score=41.07 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 520022358503752667889999999987407898
Q gi|254780684|r 153 DIFTPLCHGQRIGVFAGSGIGKSTLLSMFARSDCFD 188 (438)
Q Consensus 153 D~l~pig~GQR~gIfg~~GvGKt~Ll~~i~~~~~~d 188 (438)
T Consensus 16 ~i~l~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~ 51 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ 51 (211)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 278898899899999999955999999997699988