HHsearch alignment for GI: 254780684 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=91.25 E-value=1.1 Score=24.06 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03752667889999999987407898389931246522388999986427755328984157788034444445677788
Q gi|254780684|r 163 RIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIA 242 (438)
Q Consensus 163 R~gIfg~~GvGKt~Ll~~i~~~~~~dv~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a~~iA 242 (438)
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~~~~-~~~PT~Gf~~-------~~i~~~~--~~l~~wDlgG---q~~~R~~-----W~ 62 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE-SVVPTTGFNS-------VAIPTQD--AIMELLEIGG---SQNLRKY-----WK 62 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCE-------EEEEECC--EEEEEEECCC---HHHHHHH-----HH
T ss_conf 99999679998999999981699876-5356327746-------9999899--9999985375---2888656-----99
Q ss_pred HHHHHCCCCEEEEEEC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 8864267988999709--8999999876654047784
Q gi|254780684|r 243 EYFSSKGDNVLLILDS--ITRFAHSIREIATNSGELP 277 (438)
Q Consensus 243 Eyfr~~G~~Vll~~Ds--~tr~a~A~reis~~~ge~P 277 (438)
T Consensus 63 ~Y~-~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~ 98 (164)
T cd04162 63 RYL-SGSQGLIFVVDSADSERLPLARQELHQLLQHPP 98 (164)
T ss_pred HHH-HCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 871-177589999956888899999999999970879