HHsearch alignment for GI: 254780684 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.04  E-value=3.5e-05  Score=56.76  Aligned_cols=145  Identities=24%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             585037526678899999999874078983-8993124652238899998642775532898415778803444444567
Q gi|254780684|r  160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDK-VIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA  238 (438)
Q Consensus       160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv-~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a  238 (438)
T Consensus         1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~   70 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------LIIVGGKKASGSGELRLRLA   70 (148)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH----------HHHHCCCCCCCCHHHHHHHH
T ss_conf             99789999999702999999999872668996899875998988898765----------30001122105199999999


Q ss_pred             HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf             77888864267988999709899999987665404778432366324554200444443113678852355433342167
Q gi|254780684|r  239 VTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGD  318 (438)
Q Consensus       239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~d  318 (438)
T Consensus        71 ~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~vi---~~~n~  125 (148)
T smart00382       71 LALARKLK----PDVLILDEITSLLDAEQEALLLLLEE------------------LRLLLLLKSEKNLTVI---LTTND  125 (148)
T ss_pred             HHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH------------------HHHHCCCCCCCCEEEE---EEECC
T ss_conf             99998449----98999827502147620799999999------------------9985176578998999---95699


Q ss_pred             CCCCHHHHHHHHHCCCEEEEEH
Q ss_conf             6420278999861260898704
Q gi|254780684|r  319 NHNDPIADSVRSILDGHIVLNR  340 (438)
Q Consensus       319 d~~~pi~~~~~~i~DG~i~L~r  340 (438)
T Consensus       126 -~~~~~~~~~~~~~~~~~~~~~  146 (148)
T smart00382      126 -EKDLGPALLRRRFDRRIVLLL  146 (148)
T ss_pred             -CCCCCHHHHCCCCCEEEEEEC
T ss_conf             -522498770744787999828