HHsearch alignment for GI: 254780684 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.04 E-value=3.5e-05 Score=56.76 Aligned_cols=145 Identities=24% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 585037526678899999999874078983-8993124652238899998642775532898415778803444444567
Q gi|254780684|r 160 HGQRIGVFAGSGIGKSTLLSMFARSDCFDK-VIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTA 238 (438)
Q Consensus 160 ~GQR~gIfg~~GvGKt~Ll~~i~~~~~~dv-~V~alIGeR~rev~efi~~~~~~~l~~tvvv~~t~d~~~~~r~~a~~~a 238 (438)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 70 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------LIIVGGKKASGSGELRLRLA 70 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH----------HHHHCCCCCCCCHHHHHHHH
T ss_conf 99789999999702999999999872668996899875998988898765----------30001122105199999999
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 77888864267988999709899999987665404778432366324554200444443113678852355433342167
Q gi|254780684|r 239 VTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGD 318 (438)
Q Consensus 239 ~~iAEyfr~~G~~Vll~~Ds~tr~a~A~reis~~~ge~P~~~gyp~~~~~~~~~l~ERag~~~~~~GSiT~~~~v~~~~d 318 (438)
T Consensus 71 ~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~vi---~~~n~ 125 (148)
T smart00382 71 LALARKLK----PDVLILDEITSLLDAEQEALLLLLEE------------------LRLLLLLKSEKNLTVI---LTTND 125 (148)
T ss_pred HHHHHHCC----CCEEEEECCHHHCCCCCHHHHHHHHH------------------HHHHCCCCCCCCEEEE---EEECC
T ss_conf 99998449----98999827502147620799999999------------------9985176578998999---95699
Q ss_pred CCCCHHHHHHHHHCCCEEEEEH
Q ss_conf 6420278999861260898704
Q gi|254780684|r 319 NHNDPIADSVRSILDGHIVLNR 340 (438)
Q Consensus 319 d~~~pi~~~~~~i~DG~i~L~r 340 (438)
T Consensus 126 -~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 126 -EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred -CCCCCHHHHCCCCCEEEEEEC
T ss_conf -522498770744787999828