RPSBLAST alignment for GI: 254780684 and conserved domain: CHL00059

>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit. Length = 485
 Score = 93.9 bits (234), Expect = 8e-20
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 40/338 (11%)

Query: 56  SDNLGQVIRINLDIVYICPVGIGEEISLGDLVFHWGRF-RISPSACWCGRVINALGKPID 114
           S+N+G V+           +G G  I  G  V   G+  +I  S  + GRV+NAL KPID
Sbjct: 47  SNNVGVVL-----------MGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPID 95

Query: 115 GDDSLGKGDLSME----IMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGS 170
           G     KG++S      I S  P  ++R+ V +  +TG+  ID   P+  GQR  +    
Sbjct: 96  G-----KGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDR 150

Query: 171 GIGKS-----TLLSMFARSDCFDKVIISLV--GERG---REVREFIEDYLGDNLKKSVVV 220
             GK+     T+L+   +      VI   V  G++     +V   +++     ++ ++VV
Sbjct: 151 QTGKTAVATDTILNQKGQ-----NVICVYVAIGQKASSVAQVVTTLQE--RGAMEYTIVV 203

Query: 221 VATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVAR 280
             T+D    L+ +AP T   +AEYF  +G + L+I D +++ A + R+++      P   
Sbjct: 204 AETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGRE 263

Query: 281 GYPTSVFSELPRLLERIGPSEKE--KGNITAVISVLVDGDNHNDPIADSVRSILDGHIVL 338
            YP  VF    RLLER      +  +G++TA+  V     + +  I  +V SI DG I L
Sbjct: 264 AYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFL 323

Query: 339 NRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSL 376
           +  L   G  P ++   SVSR+   A     K++   L
Sbjct: 324 SADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKL 361