BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] (438 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/438 (100%), Positives = 438/438 (100%) Query: 1 MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLG 60 MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLG Sbjct: 1 MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLG 60 Query: 61 QVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLG 120 QVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLG Sbjct: 61 QVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLG 120 Query: 121 KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSM 180 KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSM Sbjct: 121 KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSM 180 Query: 181 FARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT 240 FARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT Sbjct: 181 FARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT 240 Query: 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS 300 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS Sbjct: 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS 300 Query: 301 EKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360 EKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL Sbjct: 301 EKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360 Query: 361 ADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 ADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS Sbjct: 361 ADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420 Query: 421 PSDLSSEDVFQEITKKLQ 438 PSDLSSEDVFQEITKKLQ Sbjct: 421 PSDLSSEDVFQEITKKLQ 438 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 132 bits (333), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 25/334 (7%) Query: 81 ISLGDLVFHWG-RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQ 139 +S GD V G + + GR++N +G+P+D ++ + + + P+ Q Sbjct: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSE--KRAIHQPSPSYTEQ 126 Query: 140 RVEKG-FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL----SMFARSDCFDKVIISL 194 + TGI+VID+ +P G +IG+F G+G+GK+ L+ + A++ V Sbjct: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG- 185 Query: 195 VGERGREVREFIEDYLGDNLK-------------KSVVVVATSDESPILRKMAPLTAVTI 241 VGER RE + + + + K ++ +E P R LT +T+ Sbjct: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245 Query: 242 AEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE 301 AE+F +G +VL +D+I RF + EI+ G +P A GY +++ E+ L ERI + Sbjct: 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI--TT 303 Query: 302 KEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLA 361 KG+IT+V ++ V D+ DP + + LD VL+R ++E+G YP +DPL S S + Sbjct: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363 Query: 362 DKAWSADEKKLVS-SLTHLIHRFEETRDIRLIGG 394 + E V+ + ++ R++ +DI I G Sbjct: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 110 bits (275), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 25/345 (7%) Query: 60 GQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSAC-WCGRVINALGKPIDGDDS 118 G + + +D V + +G +EIS GD+V GR P GRV++ALG PIDG Sbjct: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG--- 117 Query: 119 LGKGDLSMEIMS----KVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174 KG + E S P + RQ V + TGI+ ID P+ GQR + GK Sbjct: 118 --KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK 175 Query: 175 STLL--SMFARSDCFDK--------VIISLVGERGREVREFIEDYLGDN--LKKSVVVVA 222 ++++ + + DK I +G++ V F++ L D L S+VVVA Sbjct: 176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK-ALEDRGALSYSIVVVA 234 Query: 223 TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGY 282 ++ + ++ +AP + EYF G + L+ D + + A + R+++ P Y Sbjct: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAY 294 Query: 283 PTSVFSELPRLLERIGPSEKE--KGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 P VF RLLER G++TA+ + ++ + I +V SI DG I L Sbjct: 295 PGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLET 354 Query: 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385 L +G P ++ SVSR+ A K++ ++ + ++ E Sbjct: 355 ELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%) Query: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203 RVID+ P+ GQR + A GK+ LL A S +C+ +I+ L+ ER EV Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECY--LIVLLIDERPEEVT 220 Query: 204 EFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263 + G+ V+ +T DES + A+ G +V+++LDSITR Sbjct: 221 DMQRSVQGE------VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274 Query: 264 HSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD-GDNHND 322 + + +SG++ + G + + P+ + KE G++T + + LVD G ++ Sbjct: 275 RAYNVLMPSSGKI-LTGGVDANAL-QRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDE 332 Query: 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADE-------KKLVSS 375 I + + + IVL R +A++ +P +D + S +R D + +++VSS Sbjct: 333 VIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSS 392 Query: 376 LT------HLIHRFEETRD 388 + LI + ++T+D Sbjct: 393 MNSSDAIEFLIDKLKQTKD 411 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 27.7 bits (60), Expect = 0.42, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 140 RVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA---RSDC 186 ++ K + + V D + +G+ IG+ +G GK+TLL + + DC Sbjct: 289 KITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 26.6 bits (57), Expect = 0.96, Method: Compositional matrix adjust. Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 161 GQRIGVFAGSGIGKSTLLSMFA 182 +RI + SG GKSTLLS+ A Sbjct: 25 AERIVILGPSGAGKSTLLSLMA 46 >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 130 SKVPPAMNRQRVEKGF----KTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181 S++P MN ++G+ G +++ T + + +I F G GK+ LSM Sbjct: 197 SRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSML 252 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 12/48 (25%), Positives = 26/48 (54%) Query: 221 VATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIRE 268 + ++ES I + +++ + + + + L +++S FAHSIRE Sbjct: 1071 IVLAEESLIKKFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRE 1118 >gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 9/30 (30%), Positives = 17/30 (56%) Query: 43 VCLGDFVVHQGKNSDNLGQVIRINLDIVYI 72 VC GD +QG+ ++ NL+++Y+ Sbjct: 185 VCFGDGAANQGQVYESFNIAALWNLNVIYV 214 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 161 GQRIGVFAGSGIGKSTLLSMFA 182 G+ +G+ SG GKSTLL + A Sbjct: 43 GEIVGLLGRSGSGKSTLLRIIA 64 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%) Query: 337 VLNRSLAEEGRYPPVDP--LASVS 358 +LN +L E RY P++P LASV+ Sbjct: 25 LLNGTLVENFRYDPLNPLLLASVT 48 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 23.9 bits (50), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Query: 128 IMSKVPP----AMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178 I SK PP A+ + + K + + DI + G+R+ + SG GKSTL+ Sbjct: 6 INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 163 RIGVFAGSGIGKSTLLSMFARSD 185 +IG+ +G GKST+L + A D Sbjct: 34 KIGILGPNGAGKSTILRIMAGID 56 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,283 Number of Sequences: 1233 Number of extensions: 12108 Number of successful extensions: 58 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 18 length of query: 438 length of database: 328,796 effective HSP length: 77 effective length of query: 361 effective length of database: 233,855 effective search space: 84421655 effective search space used: 84421655 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)