BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780684|ref|YP_003065097.1| flagellum-specific ATP
synthase [Candidatus Liberibacter asiaticus str. psy62]
         (438 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 438

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/438 (100%), Positives = 438/438 (100%)

Query: 1   MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLG 60
           MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLG
Sbjct: 1   MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLG 60

Query: 61  QVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLG 120
           QVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLG
Sbjct: 61  QVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLG 120

Query: 121 KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSM 180
           KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSM
Sbjct: 121 KGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSM 180

Query: 181 FARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT 240
           FARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT
Sbjct: 181 FARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT 240

Query: 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS 300
           IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS
Sbjct: 241 IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPS 300

Query: 301 EKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360
           EKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL
Sbjct: 301 EKEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRL 360

Query: 361 ADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420
           ADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS
Sbjct: 361 ADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVDLILDKAVHQVPIIYDFLKQS 420

Query: 421 PSDLSSEDVFQEITKKLQ 438
           PSDLSSEDVFQEITKKLQ
Sbjct: 421 PSDLSSEDVFQEITKKLQ 438


>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score =  132 bits (333), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 25/334 (7%)

Query: 81  ISLGDLVFHWG-RFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQ 139
           +S GD V   G +  +       GR++N +G+P+D   ++   +     + +  P+   Q
Sbjct: 69  LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSE--KRAIHQPSPSYTEQ 126

Query: 140 RVEKG-FKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL----SMFARSDCFDKVIISL 194
             +     TGI+VID+ +P   G +IG+F G+G+GK+ L+    +  A++     V    
Sbjct: 127 STDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG- 185

Query: 195 VGERGREVREFIEDYLGDNLK-------------KSVVVVATSDESPILRKMAPLTAVTI 241
           VGER RE  +   + +   +              K  ++    +E P  R    LT +T+
Sbjct: 186 VGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTV 245

Query: 242 AEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSE 301
           AE+F  +G +VL  +D+I RF  +  EI+   G +P A GY +++  E+  L ERI  + 
Sbjct: 246 AEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERI--TT 303

Query: 302 KEKGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLA 361
             KG+IT+V ++ V  D+  DP   +  + LD   VL+R ++E+G YP +DPL S S + 
Sbjct: 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSML 363

Query: 362 DKAWSADEKKLVS-SLTHLIHRFEETRDIRLIGG 394
           +      E   V+  +  ++ R++  +DI  I G
Sbjct: 364 EIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397


>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 509

 Score =  110 bits (275), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 25/345 (7%)

Query: 60  GQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSAC-WCGRVINALGKPIDGDDS 118
           G  + + +D V +  +G  +EIS GD+V   GR    P      GRV++ALG PIDG   
Sbjct: 61  GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG--- 117

Query: 119 LGKGDLSMEIMS----KVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174
             KG +  E  S      P  + RQ V +   TGI+ ID   P+  GQR  +      GK
Sbjct: 118 --KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK 175

Query: 175 STLL--SMFARSDCFDK--------VIISLVGERGREVREFIEDYLGDN--LKKSVVVVA 222
           ++++  +   +    DK         I   +G++   V  F++  L D   L  S+VVVA
Sbjct: 176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK-ALEDRGALSYSIVVVA 234

Query: 223 TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGY 282
           ++ +   ++ +AP     + EYF   G + L+  D + + A + R+++      P    Y
Sbjct: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAY 294

Query: 283 PTSVFSELPRLLERIGPSEKE--KGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340
           P  VF    RLLER          G++TA+  +    ++ +  I  +V SI DG I L  
Sbjct: 295 PGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLET 354

Query: 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385
            L  +G  P ++   SVSR+   A     K++  ++   + ++ E
Sbjct: 355 ELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 67.8 bits (164), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 30/259 (11%)

Query: 150 RVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFARS------DCFDKVIISLVGERGREVR 203
           RVID+  P+  GQR  + A    GK+ LL   A S      +C+  +I+ L+ ER  EV 
Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECY--LIVLLIDERPEEVT 220

Query: 204 EFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFA 263
           +      G+      V+ +T DES           +  A+     G +V+++LDSITR  
Sbjct: 221 DMQRSVQGE------VISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLC 274

Query: 264 HSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVD-GDNHND 322
            +   +  +SG++ +  G   +   + P+       + KE G++T + + LVD G   ++
Sbjct: 275 RAYNVLMPSSGKI-LTGGVDANAL-QRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDE 332

Query: 323 PIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADE-------KKLVSS 375
            I +  +   +  IVL R +A++  +P +D + S +R  D      +       +++VSS
Sbjct: 333 VIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSS 392

Query: 376 LT------HLIHRFEETRD 388
           +        LI + ++T+D
Sbjct: 393 MNSSDAIEFLIDKLKQTKD 411


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 27.7 bits (60), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 140 RVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMFA---RSDC 186
           ++ K +   + V D    + +G+ IG+   +G GK+TLL +     + DC
Sbjct: 289 KITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 26.6 bits (57), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 161 GQRIGVFAGSGIGKSTLLSMFA 182
            +RI +   SG GKSTLLS+ A
Sbjct: 25  AERIVILGPSGAGKSTLLSLMA 46


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 429

 Score = 25.8 bits (55), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 130 SKVPPAMNRQRVEKGF----KTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLLSMF 181
           S++P  MN    ++G+      G +++   T + +  +I  F   G GK+  LSM 
Sbjct: 197 SRLPNVMNDITFQRGWFEIQDEGSQIVSNLTAITNSSQILDFCAGGGGKTLALSML 252


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1775

 Score = 25.8 bits (55), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 221  VATSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIRE 268
            +  ++ES I +       +++ +  + + +  L +++S   FAHSIRE
Sbjct: 1071 IVLAEESLIKKFFGEEIKLSVFDSNTKESNKSLAVINSTLEFAHSIRE 1118


>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 364

 Score = 25.0 bits (53), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 43  VCLGDFVVHQGKNSDNLGQVIRINLDIVYI 72
           VC GD   +QG+  ++       NL+++Y+
Sbjct: 185 VCFGDGAANQGQVYESFNIAALWNLNVIYV 214


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 24.3 bits (51), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 161 GQRIGVFAGSGIGKSTLLSMFA 182
           G+ +G+   SG GKSTLL + A
Sbjct: 43  GEIVGLLGRSGSGKSTLLRIIA 64


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 23.9 bits (50), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)

Query: 337 VLNRSLAEEGRYPPVDP--LASVS 358
           +LN +L E  RY P++P  LASV+
Sbjct: 25  LLNGTLVENFRYDPLNPLLLASVT 48


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 257

 Score = 23.9 bits (50), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 128 IMSKVPP----AMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178
           I SK PP    A+  + + K +     + DI   +  G+R+ +   SG GKSTL+
Sbjct: 6   INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 23.5 bits (49), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 163 RIGVFAGSGIGKSTLLSMFARSD 185
           +IG+   +G GKST+L + A  D
Sbjct: 34  KIGILGPNGAGKSTILRIMAGID 56


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,283
Number of Sequences: 1233
Number of extensions: 12108
Number of successful extensions: 58
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 18
length of query: 438
length of database: 328,796
effective HSP length: 77
effective length of query: 361
effective length of database: 233,855
effective search space: 84421655
effective search space used: 84421655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)