HHsearch alignment for GI: 254780685 and conserved domain: COG4787

>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion].
Probab=100.00  E-value=0  Score=351.72  Aligned_cols=233  Identities=26%  Similarity=0.403  Sum_probs=198.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             91369999999999999879997754317771133467879999742046765555321111000022455544556402
Q gi|254780685|r    1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL   80 (243)
Q Consensus         1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~l   80 (243)
T Consensus         1 MD~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav--~v~g~~~ptrt~~~~s~pg~d~spG~l~~TgR~L   78 (251)
T COG4787           1 MDHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAV--QVHGDSLPTRTFVMASTPGTDMSPGSLDYTGRPL   78 (251)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             92378988788888899888775142135663178999886301--2468875201035414676567886101368853


Q ss_pred             EEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf             13432750244136763-1232112201565684541468853566454421000000000000245422343-------
Q gi|254780685|r   81 DFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG-------  152 (243)
Q Consensus        81 D~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g-------  152 (243)
T Consensus        79 Dvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g-~lTiqg-~pViG~gg-pI~vPp~-~~v~I~~DGtIsa~~~g~~~~~  154 (251)
T COG4787          79 DVAIQGDGWLAVQDADGSEAYTRNGNIQIDATG-QLTIQG-HPVIGEGG-PITVPPG-AKVTIAADGTISALNPGDPANT  154 (251)
T ss_pred             EEEECCCCEEEEECCCCCCHHEECCCEEECCCC-CEECCC-CEEECCCC-CCCCCCC-CEEEEECCCEEEECCCCCCCCC
T ss_conf             079736856999868875011115746787654-151279-71115898-5326998-6589803855873168999984


Q ss_pred             -CCCCCCCCCCCCCHHHHHHHCCCCCCCCC----C-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -21123345455761344320256534566----6-56543456641562422214023999999999999999999999
Q gi|254780685|r  153 -KVIATMGLYSVDMSQGFVRRENSGISPNI----P-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL  226 (243)
Q Consensus       153 -~~v~~l~l~~~~~~~~l~~~~~~~~~~~~----~-~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~  226 (243)
T Consensus       155 va~vgrlKLV~~~~~~-~~~g~dGLF~l~~e~~q~~~~~~~~d~~vrV~sG~LE~SNVnav~~Mt~mI~~aRqfEmqmKm  233 (251)
T COG4787         155 VAVVGRLKLVQATGQE-VQRGDDGLFRLTAETQQPRGQVLKADPSVRVMSGALEGSNVNAVEEMTDMISLARQFEMQMKM  233 (251)
T ss_pred             EEECCEEEEEECCHHH-HHCCCCCEEEECHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1010306896068688-514888507823533487766456797346511413456533799999999988888988988


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999985
Q gi|254780685|r  227 IDENEKSMLEAIRNI  241 (243)
Q Consensus       227 i~~~de~~~~~in~l  241 (243)
T Consensus       234 ist~d~-na~~anqL  247 (251)
T COG4787         234 ISTADD-NAGAANQL  247 (251)
T ss_pred             HHHHHC-CHHHHHHH
T ss_conf             754210-06889878