HHsearch alignment for GI: 254780685 and conserved domain: COG4787
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=351.72 Aligned_cols=233 Identities=26% Similarity=0.403 Sum_probs=198.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 91369999999999999879997754317771133467879999742046765555321111000022455544556402
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~l 80 (243)
T Consensus 1 MD~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav--~v~g~~~ptrt~~~~s~pg~d~spG~l~~TgR~L 78 (251)
T COG4787 1 MDHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAV--QVHGDSLPTRTFVMASTPGTDMSPGSLDYTGRPL 78 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC--CCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 92378988788888899888775142135663178999886301--2468875201035414676567886101368853
Q ss_pred EEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 13432750244136763-1232112201565684541468853566454421000000000000245422343-------
Q gi|254780685|r 81 DFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKG------- 152 (243)
Q Consensus 81 D~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g------- 152 (243)
T Consensus 79 Dvaiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g-~lTiqg-~pViG~gg-pI~vPp~-~~v~I~~DGtIsa~~~g~~~~~ 154 (251)
T COG4787 79 DVAIQGDGWLAVQDADGSEAYTRNGNIQIDATG-QLTIQG-HPVIGEGG-PITVPPG-AKVTIAADGTISALNPGDPANT 154 (251)
T ss_pred EEEECCCCEEEEECCCCCCHHEECCCEEECCCC-CEECCC-CEEECCCC-CCCCCCC-CEEEEECCCEEEECCCCCCCCC
T ss_conf 079736856999868875011115746787654-151279-71115898-5326998-6589803855873168999984
Q ss_pred -CCCCCCCCCCCCCHHHHHHHCCCCCCCCC----C-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -21123345455761344320256534566----6-56543456641562422214023999999999999999999999
Q gi|254780685|r 153 -KVIATMGLYSVDMSQGFVRRENSGISPNI----P-PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 (243)
Q Consensus 153 -~~v~~l~l~~~~~~~~l~~~~~~~~~~~~----~-~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~ 226 (243)
T Consensus 155 va~vgrlKLV~~~~~~-~~~g~dGLF~l~~e~~q~~~~~~~~d~~vrV~sG~LE~SNVnav~~Mt~mI~~aRqfEmqmKm 233 (251)
T COG4787 155 VAVVGRLKLVQATGQE-VQRGDDGLFRLTAETQQPRGQVLKADPSVRVMSGALEGSNVNAVEEMTDMISLARQFEMQMKM 233 (251)
T ss_pred EEECCEEEEEECCHHH-HHCCCCCEEEECHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1010306896068688-514888507823533487766456797346511413456533799999999988888988988
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999985
Q gi|254780685|r 227 IDENEKSMLEAIRNI 241 (243)
Q Consensus 227 i~~~de~~~~~in~l 241 (243)
T Consensus 234 ist~d~-na~~anqL 247 (251)
T COG4787 234 ISTADD-NAGAANQL 247 (251)
T ss_pred HHHHHC-CHHHHHHH
T ss_conf 754210-06889878