HHsearch alignment for GI: 254780685 and conserved domain: PRK08425
>PRK08425 flgE flagellar hook protein FlgE; Validated.
Probab=100.00 E-value=0 Score=376.27 Aligned_cols=124 Identities=26% Similarity=0.370 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC------------CCCCCCCCCCCCCCCC
Q ss_conf 9136999999999999987999775431777113346787999974204676------------5555321111000022
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI------------DQKISFVASGKEYLSK 68 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (243)
T Consensus 1 M~rSlytGvSGL~a~~~~mdVigNNIANvNTvGfK~sr~~F~dl~sqt~~~a~~p~~~~gg~n~~QvG~Gv~v~si~~~f 80 (716)
T PRK08425 1 MLRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKKIATAPQGGLGGQNPFQIGLGVSVSSTTKIF 80 (716)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf 90677778888987530000001412205642305555518887755430245666676886775260447666777432
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEECCCCC--EEEEECCCCEECCCCCEECCCCCCCCCC
Q ss_conf 45554455640213432750244136763--1232112201565684541468853566
Q gi|254780685|r 69 EVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKYPVLD 125 (243)
Q Consensus 69 ~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g--~~yTR~G~F~~d~~G~Lvt~~G~~~vl~ 125 (243)
T Consensus 81 ~QGsl~~T~~~tDlAI~G~GFFvV~~~~g~~~~YTRaG~F~~D~~G~LVn~~G-~~vqG 138 (716)
T PRK08425 81 SQGSVQNTDKNTDLAIQGDGFFIVSPDGGITRYYTRDGDFKFDAQGNFVNNAG-FVVQG 138 (716)
T ss_pred CCCCCEECCCCCEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCCCEECCCC-CEEEE
T ss_conf 57671556984118982754899832898611570376644889986788999-88870