HHsearch alignment for GI: 254780685 and conserved domain: PRK08425

>PRK08425 flgE flagellar hook protein FlgE; Validated.
Probab=100.00  E-value=0  Score=376.27  Aligned_cols=124  Identities=26%  Similarity=0.370  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC------------CCCCCCCCCCCCCCCC
Q ss_conf             9136999999999999987999775431777113346787999974204676------------5555321111000022
Q gi|254780685|r    1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI------------DQKISFVASGKEYLSK   68 (243)
Q Consensus         1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~------------~~~~~~~~~~~~~~~~   68 (243)
T Consensus         1 M~rSlytGvSGL~a~~~~mdVigNNIANvNTvGfK~sr~~F~dl~sqt~~~a~~p~~~~gg~n~~QvG~Gv~v~si~~~f   80 (716)
T PRK08425          1 MLRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKKIATAPQGGLGGQNPFQIGLGVSVSSTTKIF   80 (716)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf             90677778888987530000001412205642305555518887755430245666676886775260447666777432


Q ss_pred             CCCCCCCCCCEEEEEECCCCEEEECCCCC--EEEEECCCCEECCCCCEECCCCCCCCCC
Q ss_conf             45554455640213432750244136763--1232112201565684541468853566
Q gi|254780685|r   69 EVGSFISTGTELDFALEGDAWFALESPRG--IILTRDGRFKVTDDGSLVSASGKYPVLD  125 (243)
Q Consensus        69 ~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g--~~yTR~G~F~~d~~G~Lvt~~G~~~vl~  125 (243)
T Consensus        81 ~QGsl~~T~~~tDlAI~G~GFFvV~~~~g~~~~YTRaG~F~~D~~G~LVn~~G-~~vqG  138 (716)
T PRK08425         81 SQGSVQNTDKNTDLAIQGDGFFIVSPDGGITRYYTRDGDFKFDAQGNFVNNAG-FVVQG  138 (716)
T ss_pred             CCCCCEECCCCCEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCCCEECCCC-CEEEE
T ss_conf             57671556984118982754899832898611570376644889986788999-88870