HHsearch alignment for GI: 254780685 and conserved domain: PRK12636
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional.
Probab=100.00 E-value=0 Score=471.06 Aligned_cols=240 Identities=25% Similarity=0.389 Sum_probs=209.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCCCCCCC
Q ss_conf 91369999999999999879997754317771133467879999742046765------------555321111000022
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID------------QKISFVASGKEYLSK 68 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 68 (243)
T Consensus 1 M~r~lYta~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~ 80 (263)
T PRK12636 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTVGYKKSRVTFKDMVSQTISGASGPTANRGGVNSKQVGLGSTLGSIDTIH 80 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf 96589999999999999788998999877765448472318999887631467766566776651230212542467542
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45554455640213432750244136763123211220156568454146885356645442100000000000024542
Q gi|254780685|r 69 EVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEI 148 (243)
Q Consensus 69 ~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i 148 (243)
T Consensus 81 ~qG~l~~Tg~~lDlAI~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G-~~Vl~~~g~pI~ip~~~~~~~I~~dG~i 159 (263)
T PRK12636 81 TQGSLQTTGRPLDLAISGDGYFRVGSGDETYYTRAGNFYLDNEGNLVNADG-LYLLGMNGGRINIPTDAQSFSIGPDGTV 159 (263)
T ss_pred CCCCEEECCCCCEEEECCCCEEEECCCCCEEEEEECCEEECCCCCEECCCC-CEEECCCCCCCCCCCCCCEEEECCCCEE
T ss_conf 787714369821189858877887499974799704588989988886999-9806899987646888725887588528
Q ss_pred CC-----CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-----CCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 23-----4321123345455761344320256534566656543-----4566415624222140239999999999999
Q gi|254780685|r 149 SQ-----KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLE-----DLSGVTVKRGFLEDSNANSMYEMGQMIHLTQ 218 (243)
Q Consensus 149 ~~-----~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qR 218 (243)
T Consensus 160 ~~~~~~g~~~~vg~l~l~~f~~~~~L~~~G~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVn~~~Emv~mI~~qR 239 (263)
T PRK12636 160 SYVDANGENQTAGQIGLATFANPSGLEKAGNNLYRETLNSGAPQVVVPGEGGTGKIQSGALEMSNVDLSEEFTEMIVAQR 239 (263)
T ss_pred EEECCCCCCEEEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHHHHH
T ss_conf 89607995036789899951686873005896375136677755467787876416038476134759999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999985
Q gi|254780685|r 219 KFNSITTLIDENEKSMLEAIRNI 241 (243)
Q Consensus 219 afe~~~k~i~~~de~~~~~in~l 241 (243)
T Consensus 240 aye~n~K~i~~~De~~~~~~nl~ 262 (263)
T PRK12636 240 GFQANTRIITTSDEILQELVNLK 262 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999889999999999999745