HHsearch alignment for GI: 254780685 and conserved domain: PRK12637
>PRK12637 flgE flagellar hook protein FlgE; Provisional.
Probab=100.00 E-value=0 Score=358.30 Aligned_cols=230 Identities=25% Similarity=0.357 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 69999999999999879997754317771133467879999742046765555321111000022455544556402134
Q gi|254780685|r 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFA 83 (243)
Q Consensus 4 ~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~lD~A 83 (243)
T Consensus 2 ~~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~~-----~~g~g~~~~~~~~~~~~G~~~~t~~~~d~a 76 (473)
T PRK12637 2 GFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASS-----RVGLGVKVSAINQRFTVGNISTTGGEYDMA 76 (473)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCC-----CCCCCEEEEEEEEEECCCCEEECCCCCEEE
T ss_conf 377899999998855325514767377600085667166754558-----766734764789882567806679834388
Q ss_pred EC-CCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCC-----CC--CCCCCC------------------
Q ss_conf 32-750244136763-1232112201565684541468853566454-----42--100000------------------
Q gi|254780685|r 84 LE-GDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMAS-----VP--IQIPQK------------------ 136 (243)
Q Consensus 84 i~-G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g-----~p--I~ip~~------------------ 136 (243)
T Consensus 77 i~~g~GfF~v~~~~~~~~yTR~G~F~~d~~g~lv~~~G~-~lqG~~~~~~g~~~~~i~l~~~~~~p~aTt~~~~~~NL~~ 155 (473)
T PRK12637 77 IDGGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGF-RLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNA 155 (473)
T ss_pred EECCCEEEEEECCCCCEEEECCCCEEECCCCEEECCCCC-EEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCC
T ss_conf 946970799973899667743642668799709858998-8776446778874011354677758743205878884067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780685|r 137 -------------------------------------------------------------------------------- 136 (243)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (243)
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d 235 (473)
T PRK12637 156 NAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGYQPYKPLVAGIPFD 235 (473)
T ss_pred CCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76444776664546501014512576236760222012333564345520220552013323566654433212356568
Q ss_pred ----------------------------------------------------------------------------C---
Q ss_conf ----------------------------------------------------------------------------0---
Q gi|254780685|r 137 ----------------------------------------------------------------------------D--- 137 (243)
Q Consensus 137 ----------------------------------------------------------------------------~--- 137 (243)
T Consensus 236 ~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~tl~fd~~g~l~~~~~~~~~t 315 (473)
T PRK12637 236 PTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQPMQVNGGASQTLNFDTAGNLLNQPPTAQVT 315 (473)
T ss_pred CCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 77775313443069882689825789998614677877436899953787312357763058865888514788742157
Q ss_pred --------------------------------------------CCCCCCCCCCCC---CCC--CCCCCCCCCCCCCHHH
Q ss_conf --------------------------------------------000000245422---343--2112334545576134
Q gi|254780685|r 138 --------------------------------------------EIFNVGEKGEIS---QKG--KVIATMGLYSVDMSQG 168 (243)
Q Consensus 138 --------------------------------------------~~~~i~~dG~i~---~~g--~~v~~l~l~~~~~~~~ 168 (243)
T Consensus 316 ~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~~~~~qdG~~~G~L~~~~Id~dG~I~g~ySNG~t~~l~qIaLA~F~Np~G 395 (473)
T PRK12637 316 FANPGGNAAPADPLAITVSYNGVTQYGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQG 395 (473)
T ss_pred EECCCCCCCCCCCEEEEECCCCEEEECCCCCCEECCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHH
T ss_conf 62578776767760488726651675466651230278445415688989994899998799598988999996169586
Q ss_pred HHHHCCCCCCCCCCCCCC-CC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 432025653456665654-34----566415624222140239999999999999999999999999999999999
Q gi|254780685|r 169 FVRRENSGISPNIPPTPL-ED----LSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 (243)
Q Consensus 169 l~~~~~~~~~~~~~~~~~-~~----~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in 239 (243)
T Consensus 396 L~~~G~n~y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~mIvtQR~yQANSKvItTsDemLqelin 471 (473)
T PRK12637 396 LQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMN 471 (473)
T ss_pred CEECCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHH
T ss_conf 6013796387201378855757998886217217540244079999999999876501432588758999999970