HHsearch alignment for GI: 254780685 and conserved domain: PRK12640
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=450.45 Aligned_cols=234 Identities=26% Similarity=0.382 Sum_probs=198.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 91369999999999999879997754317771133467879999742046765555321111000022455544556402
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTEL 80 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~l 80 (243)
T Consensus 1 M~r~ly~a~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~qG~l~~Tg~~l 78 (246)
T PRK12640 1 MDKALYTAMSGASQNLNQQAVHANNLANASTPGFRADLAQARAVPVF--GEGLPTRVFALASTPGADFTPGPIQTTGRPL 78 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHCC--CCCCCCCEEEEECCCCEEECCCCEEECCCCC
T ss_conf 91489999999999998578898888867777660145645400224--8777730367503441141788735569833
Q ss_pred EEEECCCCEEEECCCCCE-EEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
Q ss_conf 134327502441367631-23211220156568454146885356645442100000000000024542234--------
Q gi|254780685|r 81 DFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK-------- 151 (243)
Q Consensus 81 D~Ai~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~-------- 151 (243)
T Consensus 79 DlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G-~~Vl~~~g-pI~ip~~-~~~~I~~dG~i~~~~~g~~~~~ 155 (246)
T PRK12640 79 DVALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLVTANG-LPVLGDGG-PIAVPPG-AKITIGADGTISILPQGDPPNT 155 (246)
T ss_pred EEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCC-CEEECCCC-CEECCCC-CCEEECCCCEEEEEECCCCCCC
T ss_conf 0887699579998799854257756289999998892789-89657999-6345898-7347757865999637987442
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32112334545576134432025653456665654345664156242221402399999999999999999999999999
Q gi|254780685|r 152 GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENE 231 (243)
Q Consensus 152 g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~d 231 (243)
T Consensus 156 ~~~vg~l~lv~~~-~~~l~k~~~~l~~~~~-~~~~~~~~~~~v~qG~LE~SNV~~~~Em~~mI~~qRaye~n~k~i~~~D 233 (246)
T PRK12640 156 VAEVGRIKLVNPP-ANQLTRGDDGLFRLKS-GAPAPADPNVRVVSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTAD 233 (246)
T ss_pred CEEEEEEEEECCC-HHHCEECCCCCEECCC-CCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1244268995387-3550114897376478-8877778874276451532356799999999999999999999999899
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999853
Q gi|254780685|r 232 KSMLEAIRNIA 242 (243)
Q Consensus 232 e~~~~~in~lg 242 (243)
T Consensus 234 e-m~~~an~l~ 243 (246)
T PRK12640 234 D-NAQAANQLL 243 (246)
T ss_pred H-HHHHHHHHH
T ss_conf 9-999999874