HHsearch alignment for GI: 254780685 and conserved domain: PRK12689
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed.
Probab=100.00 E-value=0 Score=472.98 Aligned_cols=239 Identities=29% Similarity=0.525 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9136999999999999987999775431777113346787999974204676-----55553211110000224555445
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI-----DQKISFVASGKEYLSKEVGSFIS 75 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~G~l~~ 75 (243)
T Consensus 1 M~~~lYta~Sgm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~d~~qG~l~~ 80 (253)
T PRK12689 1 MQNALLVGLSRQMALERQLDVVANNVANVNTNGFKADRSLFQEYLMPGAHEDNFVGPDRRVSYVQDRGTYLDFSQGPLEQ 80 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECEEEEECCCCCEEE
T ss_conf 90289999999999997127887889867765437361127998621256667667776314688420475527878132
Q ss_pred CCCEEEEEECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 564021343275024413676312321122015656845414688535664544210000000000002454223-----
Q gi|254780685|r 76 TGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQ----- 150 (243)
Q Consensus 76 Tg~~lD~Ai~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~----- 150 (243)
T Consensus 81 Tg~~lDlAI~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G-~~Vl~~~g-pi~~~p~~~~i~I~~dG~i~~~~~~~ 158 (253)
T PRK12689 81 TKNPLDVAIDGDAFLAVQTPQGERYTRDGALEINAQGQLVTSSG-YPVLGTGG-PIVFQPTDTDINISPDGTVSVLEGTA 158 (253)
T ss_pred CCCCCEEEECCCCEEEEECCCCCCEEECCCEEECCCCCEEECCC-CEEECCCC-CEEECCCCCCEEECCCCCEEECCCCC
T ss_conf 59830399879817999727875067546167989986890899-88167999-72608988633776897089704887
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -4321123345455761344320256534566656543456641562422214023999999999999999999999999
Q gi|254780685|r 151 -KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDE 229 (243)
Q Consensus 151 -~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~ 229 (243)
T Consensus 159 ~~~~~~g~l~l~~~~~~~~L~~~G~~l~~~~~~~~~--~~~~~~v~qG~LE~SNVd~~~EM~~mI~~qRafe~n~k~i~~ 236 (253)
T PRK12689 159 TTDSIRGKLRLVTFANPQQLTKEGANLYAAGAPARA--PDTKARVEQGYIEKSNVNAVLEMTRMMEVTRTYTQVSSMLQQ 236 (253)
T ss_pred CCCCEEEEEEEEECCCHHHHEECCCCEEECCCCCCC--CCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 663134578998238867700158955857888778--888861602732202364999999999999999999999999
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999998539
Q gi|254780685|r 230 NEKSMLEAIRNIAS 243 (243)
Q Consensus 230 ~de~~~~~in~lgs 243 (243)
T Consensus 237 ~Dem~~~ai~~lg~ 250 (253)
T PRK12689 237 QSDLRKTAIEKLAD 250 (253)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999707