HHsearch alignment for GI: 254780685 and conserved domain: PRK12691
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=451.75 Aligned_cols=236 Identities=22% Similarity=0.398 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC--------------CCCCCCCCCCCCCC
Q ss_conf 1369999999999999879997754317771133467879999742046765--------------55532111100002
Q gi|254780685|r 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--------------QKISFVASGKEYLS 67 (243)
Q Consensus 2 ~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 67 (243)
T Consensus 1 lr~lyta~SGm~a~~~~ld~iaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gv~~~~~~~~ 80 (262)
T PRK12691 1 MRALSIAATGMAAQQLNVEVISNNIANMNTTGFKRARAEFQDLLYQQERRVGAQSSDNGTIVPTGVQLGLGVKTAAVRRI 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 93199999999999972578888888777564474746389999877413587666656435655410352475468875
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 245554455640213432750244136763-1232112201565684541468853566454421000000000000245
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG 146 (243)
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G-~~vl~~----i~ip~~~~~i~I~~dG 155 (262)
T PRK12691 81 HTQGTLSQTGNDLDLAIQGRGYFQIQLPDGETAYTRDGAFNRSADGQIVTADG-YPVQPG----ITIPQDATSITINASG 155 (262)
T ss_pred CCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCC-CCCCCC----CCCCCCCCCEEECCCC
T ss_conf 15787530688213898489568885589957365445267989964892799-894676----1058998513787897
Q ss_pred CCCC------CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-C----CCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 4223------432112334545576134432025653456665654-3----4566415624222140239999999999
Q gi|254780685|r 147 EISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPL-E----DLSGVTVKRGFLEDSNANSMYEMGQMIH 215 (243)
Q Consensus 147 ~i~~------~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~~v~qG~LE~SNVn~~~EMv~lI~ 215 (243)
T Consensus 156 ~i~~~~~g~~~~~~vg~l~l~~f~n~~~L~~~g~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~Em~~mI~ 235 (262)
T PRK12691 156 QVSVTLDGQTQPQVLGQITLARFTNEAGLEAIGDNLFRETPASGAPQVGVPGEDGFGTIRQGYLEASNVDVVKEITDLIT 235 (262)
T ss_pred EEEEEECCCCCCEEEEEEEEEECCCHHHCEECCCCCEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHH
T ss_conf 69998468877417778999831784770215886177336778851156788872268438565344659999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999999853
Q gi|254780685|r 216 LTQKFNSITTLIDENEKSMLEAIRNIA 242 (243)
Q Consensus 216 ~qRafe~~~k~i~~~de~~~~~in~lg 242 (243)
T Consensus 236 ~qRaye~n~k~i~t~De~~~~a~nllR 262 (262)
T PRK12691 236 AQRAYEMNSKVISAADEMLQTTSKNLR 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999998668