HHsearch alignment for GI: 254780685 and conserved domain: PRK12692
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=437.73 Aligned_cols=235 Identities=23% Similarity=0.393 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC--------------CCCCCCCCCCCCCC
Q ss_conf 1369999999999999879997754317771133467879999742046765--------------55532111100002
Q gi|254780685|r 2 QTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID--------------QKISFVASGKEYLS 67 (243)
Q Consensus 2 ~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 67 (243)
T Consensus 1 lr~ly~a~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 80 (262)
T PRK12692 1 MRALAIAATGMSAQQLNVEVIANNIANLNTTGFKRARAEFTDLLYQAERQQGVPNQAGQEAVPEGAMLGLGVRAAAIRNL 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 92399999999999971478888998777664585746389999877521477665677446766532341355357875
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 245554455640213432750244136763-1232112201565684541468853566454421000000000000245
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKG 146 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG 146 (243)
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G-~~v----~~~i~~p~~~~~i~i~~~G 155 (262)
T PRK12692 81 HRQGPLAQTGNPLDLAVNGRGWFQVTGPNGEINYTRAGSFNKNADGQLVTAEG-YAV----DPAILIPQNTTQVTINESG 155 (262)
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCC-CCC----CCCCCCCCCCEEEEECCCC
T ss_conf 15787421698103898689679997479958789745378999999881788-774----7752168885158877985
Q ss_pred CCCC------CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC-CCCCCC----CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 4223------43211233454557613443202565345666-565434----566415624222140239999999999
Q gi|254780685|r 147 EISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIP-PTPLED----LSGVTVKRGFLEDSNANSMYEMGQMIH 215 (243)
Q Consensus 147 ~i~~------~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~-~~~~~~----~~~~~v~qG~LE~SNVn~~~EMv~lI~ 215 (243)
T Consensus 156 ~i~~~~~g~~~~~~ig~l~l~~f~~~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~EMv~mI~ 235 (262)
T PRK12692 156 QVFAKLDGQVTPQLLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGVPGDVGFGKIQQGYLESSNVDPVKEITELIS 235 (262)
T ss_pred EEEEECCCCCCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHHHHHHH
T ss_conf 59995278767530005889961580203256886201466677854467887874538317610355659999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999985
Q gi|254780685|r 216 LTQKFNSITTLIDENEKSMLEAIRNI 241 (243)
Q Consensus 216 ~qRafe~~~k~i~~~de~~~~~in~l 241 (243)
T Consensus 236 ~qRafe~n~k~i~~~Dem~~~~~~li 261 (262)
T PRK12692 236 AQRAFEMNSKVIQAADEMAGTVSKGI 261 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999763