HHsearch alignment for GI: 254780685 and conserved domain: PRK12816
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=446.92 Aligned_cols=235 Identities=24% Similarity=0.351 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCCCCCCCC
Q ss_conf 91369999999999999879997754317771133467879999742046765-------------55532111100002
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDID-------------QKISFVASGKEYLS 67 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 67 (243)
T Consensus 1 M~r~lyta~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~ 80 (264)
T PRK12816 1 MMRSLWTAATGMIAQQYNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQVRAGTPATEDTLIPLGVQVGHGVKVAATQRL 80 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
T ss_conf 95489999999999998578898999877666558574718999887652158876555546666432442562221355
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEECCCCCE-EEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 2455544556402134327502441367631-232112201565684541468853566454421000000--0000002
Q gi|254780685|r 68 KEVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKD--EIFNVGE 144 (243)
Q Consensus 68 ~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~--~~~~i~~ 144 (243)
T Consensus 81 f~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G-~~Vl~----~i~~P~~~~~~~i~i~~ 155 (264)
T PRK12816 81 FEQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNRQLVTSNG-YLLLP----EIIFPEEYILNSIMISE 155 (264)
T ss_pred CCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCC-CCCCC----CCCCCCCCCCCCEEECC
T ss_conf 16888540698203898489489997379956388755478999988890999-89278----75389875556448878
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCC----CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 454223------4321123345455761344320256534566656-5434----5664156242221402399999999
Q gi|254780685|r 145 KGEISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT-PLED----LSGVTVKRGFLEDSNANSMYEMGQM 213 (243)
Q Consensus 145 dG~i~~------~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~----~~~~~v~qG~LE~SNVn~~~EMv~l 213 (243)
T Consensus 156 dG~i~~~~~~~~~~~~vg~l~l~~~~np~~L~~~G~nl~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~EMv~m 235 (264)
T PRK12816 156 EGIVTVKVGEDIEPIELGQIELYRFVNPAGLQAIGKNLFKETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVEEMVTM 235 (264)
T ss_pred CCEEEEECCCCCCCEEEEEEEEEEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHHHHHHH
T ss_conf 98499953898774155677898722704433137852002666777555777878720583284762236599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999998
Q gi|254780685|r 214 IHLTQKFNSITTLIDENEKSMLEAIRN 240 (243)
Q Consensus 214 I~~qRafe~~~k~i~~~de~~~~~in~ 240 (243)
T Consensus 236 I~~qR~fe~~~K~i~t~De~~~~~~nl 262 (264)
T PRK12816 236 IVAQRAYEINSKAIQTSDNMLGTANNL 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999862