HHsearch alignment for GI: 254780685 and conserved domain: PRK12817
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed.
Probab=100.00 E-value=0 Score=443.29 Aligned_cols=239 Identities=22% Similarity=0.324 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC---------CCCCCCCCCCCCCCCCCCC
Q ss_conf 9136999999999999987999775431777113346787999974204676---------5555321111000022455
Q gi|254780685|r 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDI---------DQKISFVASGKEYLSKEVG 71 (243)
Q Consensus 1 M~~~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~G 71 (243)
T Consensus 1 M~rglYta~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~~qG 80 (261)
T PRK12817 1 MLRALWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFQDLVQETLDRKGYPVNDRKNIITGTGVKATNWIRDNQQG 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 95689999999999998678998889877774437471128999987622467665678764003338740247654887
Q ss_pred CCCCCCCEEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCC-C-----CCCCCCCCCCCCCCCCC
Q ss_conf 54455640213432750244136763-12321122015656845414688535664-5-----44210000000000002
Q gi|254780685|r 72 SFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDM-A-----SVPIQIPQKDEIFNVGE 144 (243)
Q Consensus 72 ~l~~Tg~~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~-~-----g~pI~ip~~~~~~~i~~ 144 (243)
T Consensus 81 ~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~-~v~~~~~~~~~~~~~~~~~~~~~~i~i~~ 159 (261)
T PRK12817 81 NLLTTGNKTDLAIDGEGFFRVIMPDGTYAYTRAGNFNIDSNGMLVDENGN-RLEIQYQPEGVGILNRNGGFDSNNINIAE 159 (261)
T ss_pred CEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCC-EECCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 83536984238985884799983899676886886479999998989998-82145667666667777777776289899
Q ss_pred CCCCCCCC-----CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45422343-----2112334545576134432025653456665654345664156242221402399999999999999
Q gi|254780685|r 145 KGEISQKG-----KVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQK 219 (243)
Q Consensus 145 dG~i~~~g-----~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRa 219 (243)
T Consensus 160 dG~i~~~~~~~~~~~vg~l~l~~~~~~~~L~~~G~~l~~~~~~~~~-~~~~~~~v~qG~LE~SNV~~~~EMv~li~~qRa 238 (261)
T PRK12817 160 DGSISVKDVDGQNKKVGKINIYNAVGDDAFISIGDNLYVPSDGAQV-FLNNDVSILQGYLENSNVDLGKEMTDMIITQRA 238 (261)
T ss_pred CCEEEEECCCCCEEEEEEEEEECCCCCHHCEECCCCEEEECCCCCC-CCCCCCEEECCCEEHHCCCHHHHHHHHHHHHHH
T ss_conf 9669982389861787888886137805436758955870788877-768886186485211217399999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999853
Q gi|254780685|r 220 FNSITTLIDENEKSMLEAIRNIA 242 (243)
Q Consensus 220 fe~~~k~i~~~de~~~~~in~lg 242 (243)
T Consensus 239 ye~n~k~i~t~Dem~~-~~nnlr 260 (261)
T PRK12817 239 FQLSSKGIKTADEMWG-IINNMR 260 (261)
T ss_pred HHHHHHHHHHHHHHHH-HHHHCC
T ss_conf 9999899999999999-998617