HHsearch alignment for GI: 254780685 and conserved domain: TIGR02488
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00 E-value=0 Score=516.10 Aligned_cols=232 Identities=24% Similarity=0.373 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCCCCCC
Q ss_conf 6999999999999987999775431777113346787999974204676555--------------53211110000224
Q gi|254780685|r 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--------------ISFVASGKEYLSKE 69 (243)
Q Consensus 4 ~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 69 (243)
T Consensus 1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~at~k~~~ 80 (263)
T TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVVATQKLFT 80 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEEEEEEEEE
T ss_conf 93033655888735788877633110234412123676557477312588887776300346624358504235766641
Q ss_pred CCCCCCCCCEEEEEECCCCEEEECCCCCE-EEEECCCCEECCCCCEECC---CCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 55544556402134327502441367631-2321122015656845414---6885356645442100000000-00002
Q gi|254780685|r 70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA---SGKYPVLDMASVPIQIPQKDEI-FNVGE 144 (243)
Q Consensus 70 ~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~---~G~~~vl~~~g~pI~ip~~~~~-~~i~~ 144 (243)
T Consensus 81 QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~G-y~l~P----~ItiP~~A~~ni~v~~ 155 (263)
T TIGR02488 81 QGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDG-YPLQP----EITIPENATSNITVGS 155 (263)
T ss_pred CCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCC-CEECC----EEECCCCCCEEEEECC
T ss_conf 672010587600478648338986699876101246746089952764434689-65366----2471888701069867
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-----CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 454223------43211233454557613443202565345666565434-----5664156242221402399999999
Q gi|254780685|r 145 KGEISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQM 213 (243)
Q Consensus 145 dG~i~~------~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~v~qG~LE~SNVn~~~EMv~l 213 (243)
T Consensus 156 dG~VsV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~vV~Emvdm 235 (263)
T TIGR02488 156 DGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNVVQEMVDM 235 (263)
T ss_pred CCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHH
T ss_conf 87899983789720001010112101543477345641015788688768888888733888161630267445666423
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999985
Q gi|254780685|r 214 IHLTQKFNSITTLIDENEKSMLEAIRNI 241 (243)
Q Consensus 214 I~~qRafe~~~k~i~~~de~~~~~in~l 241 (243)
T Consensus 236 I~aQRAYE~NSK~i~asD~Mlq-~~~~~ 262 (263)
T TIGR02488 236 ITAQRAYEMNSKVIQASDQMLQ-TVSQL 262 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHC
T ss_conf 3688898775388887999999-99612