HHsearch alignment for GI: 254780685 and conserved domain: TIGR02488

>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00  E-value=0  Score=516.10  Aligned_cols=232  Identities=24%  Similarity=0.373  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCCCCCC
Q ss_conf             6999999999999987999775431777113346787999974204676555--------------53211110000224
Q gi|254780685|r    4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQK--------------ISFVASGKEYLSKE   69 (243)
Q Consensus         4 ~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~   69 (243)
T Consensus         1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~at~k~~~   80 (263)
T TIGR02488         1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVVATQKLFT   80 (263)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEEEEEEEEE
T ss_conf             93033655888735788877633110234412123676557477312588887776300346624358504235766641


Q ss_pred             CCCCCCCCCEEEEEECCCCEEEECCCCCE-EEEECCCCEECCCCCEECC---CCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             55544556402134327502441367631-2321122015656845414---6885356645442100000000-00002
Q gi|254780685|r   70 VGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSA---SGKYPVLDMASVPIQIPQKDEI-FNVGE  144 (243)
Q Consensus        70 ~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~---~G~~~vl~~~g~pI~ip~~~~~-~~i~~  144 (243)
T Consensus        81 QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~G-y~l~P----~ItiP~~A~~ni~v~~  155 (263)
T TIGR02488        81 QGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDG-YPLQP----EITIPENATSNITVGS  155 (263)
T ss_pred             CCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCC-CEECC----EEECCCCCCEEEEECC
T ss_conf             672010587600478648338986699876101246746089952764434689-65366----2471888701069867


Q ss_pred             CCCCCC------CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-----CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf             454223------43211233454557613443202565345666565434-----5664156242221402399999999
Q gi|254780685|r  145 KGEISQ------KGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLED-----LSGVTVKRGFLEDSNANSMYEMGQM  213 (243)
Q Consensus       145 dG~i~~------~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~v~qG~LE~SNVn~~~EMv~l  213 (243)
T Consensus       156 dG~VsV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~vV~Emvdm  235 (263)
T TIGR02488       156 DGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNVVQEMVDM  235 (263)
T ss_pred             CCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHH
T ss_conf             87899983789720001010112101543477345641015788688768888888733888161630267445666423


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999985
Q gi|254780685|r  214 IHLTQKFNSITTLIDENEKSMLEAIRNI  241 (243)
Q Consensus       214 I~~qRafe~~~k~i~~~de~~~~~in~l  241 (243)
T Consensus       236 I~aQRAYE~NSK~i~asD~Mlq-~~~~~  262 (263)
T TIGR02488       236 ITAQRAYEMNSKVIQASDQMLQ-TVSQL  262 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHC
T ss_conf             3688898775388887999999-99612