HHsearch alignment for GI: 254780685 and conserved domain: TIGR02489

>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=99.52  E-value=8.8e-16  Score=112.54  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=108.3

Q ss_pred             CCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCC---CCC----CCCCCCCCC--------------------
Q ss_conf             27502441367631232112201565684541468853566---454----421000000--------------------
Q gi|254780685|r   85 EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD---MAS----VPIQIPQKD--------------------  137 (243)
Q Consensus        85 ~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~---~~g----~pI~ip~~~--------------------  137 (243)
T Consensus       674 PEPA~f~~gsge~p~~fegGra~Fn~DGsL~g~n--Ppti~F~PknGa~~pQri~L~FG~sgtf~GL~S~dk~S~~~~~~  751 (877)
T TIGR02489       674 PEPAEFVNGSGEKPNIFEGGRARFNEDGSLAGMN--PPTIQFDPKNGAASPQRIELSFGTSGTFDGLTSSDKASTTTGIA  751 (877)
T ss_pred             CCCCEECCCCCCCCCEECCCEEEECCCCCCCCCC--CCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCCHHHCCCC
T ss_conf             8985152563476516236418878876647688--86212177788778840677527654268731213310012513


Q ss_pred             -----------CCCCCCCCCCCC---CCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCCC----CCCEEEE
Q ss_conf             -----------000000245422---3432--112334545576134432025653456665-654345----6641562
Q gi|254780685|r  138 -----------EIFNVGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDL----SGVTVKR  196 (243)
Q Consensus       138 -----------~~~~i~~dG~i~---~~g~--~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~----~~~~v~q  196 (243)
T Consensus       752 ~nGY~sG~L~dDaiR~D~~G~LlGeFsNGk~~alA~vA~As~aNN~GL~a~GgNlf~~TaNSGepvVG~AgtGgRG~~~~  831 (877)
T TIGR02489       752 QNGYQSGNLKDDAIRFDSNGNLLGEFSNGKTLALAQVALASFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEVST  831 (877)
T ss_pred             CCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCCCCEEECCCCCCCCCCCC
T ss_conf             36613578775507873787475530386036877888773005433021267115431343882063258888786044


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4222140239999999999999999999999999999999999
Q gi|254780685|r  197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR  239 (243)
Q Consensus       197 G~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in  239 (243)
T Consensus       832 SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~TLlq  874 (877)
T TIGR02489       832 SALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQ  874 (877)
T ss_pred             CCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHHHHH
T ss_conf             5210010046664301277651411456403015789999974