HHsearch alignment for GI: 254780685 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=99.52 E-value=8.8e-16 Score=112.54 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=108.3
Q ss_pred CCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCC---CCC----CCCCCCCCC--------------------
Q ss_conf 27502441367631232112201565684541468853566---454----421000000--------------------
Q gi|254780685|r 85 EGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLD---MAS----VPIQIPQKD-------------------- 137 (243)
Q Consensus 85 ~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~---~~g----~pI~ip~~~-------------------- 137 (243)
T Consensus 674 PEPA~f~~gsge~p~~fegGra~Fn~DGsL~g~n--Ppti~F~PknGa~~pQri~L~FG~sgtf~GL~S~dk~S~~~~~~ 751 (877)
T TIGR02489 674 PEPAEFVNGSGEKPNIFEGGRARFNEDGSLAGMN--PPTIQFDPKNGAASPQRIELSFGTSGTFDGLTSSDKASTTTGIA 751 (877)
T ss_pred CCCCEECCCCCCCCCEECCCEEEECCCCCCCCCC--CCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCCHHHCCCC
T ss_conf 8985152563476516236418878876647688--86212177788778840677527654268731213310012513
Q ss_pred -----------CCCCCCCCCCCC---CCCC--CCCCCCCCCCCCHHHHHHHCCCCCCCCCCC-CCCCCC----CCCEEEE
Q ss_conf -----------000000245422---3432--112334545576134432025653456665-654345----6641562
Q gi|254780685|r 138 -----------EIFNVGEKGEIS---QKGK--VIATMGLYSVDMSQGFVRRENSGISPNIPP-TPLEDL----SGVTVKR 196 (243)
Q Consensus 138 -----------~~~~i~~dG~i~---~~g~--~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~----~~~~v~q 196 (243)
T Consensus 752 ~nGY~sG~L~dDaiR~D~~G~LlGeFsNGk~~alA~vA~As~aNN~GL~a~GgNlf~~TaNSGepvVG~AgtGgRG~~~~ 831 (877)
T TIGR02489 752 QNGYQSGNLKDDAIRFDSNGNLLGEFSNGKTLALAQVALASFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEVST 831 (877)
T ss_pred CCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHCCCEEEECCCCCCCEEECCCCCCCCCCCC
T ss_conf 36613578775507873787475530386036877888773005433021267115431343882063258888786044
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4222140239999999999999999999999999999999999
Q gi|254780685|r 197 GFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIR 239 (243)
Q Consensus 197 G~LE~SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~in 239 (243)
T Consensus 832 SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~TLlq 874 (877)
T TIGR02489 832 SALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQ 874 (877)
T ss_pred CCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHHHHH
T ss_conf 5210010046664301277651411456403015789999974