HHsearch alignment for GI: 254780685 and conserved domain: TIGR02490
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=0 Score=443.40 Aligned_cols=234 Identities=28% Similarity=0.403 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 69999999999999879997754317771133467879999742-04676555532111100002245554455640213
Q gi|254780685|r 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF 82 (243)
Q Consensus 4 ~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~lD~ 82 (243)
T Consensus 1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~--~Mv~G~G~ptR~~v~~~~~G~D~~~G~~~~TGR~LDv 78 (254)
T TIGR02490 1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAV--PMVDGDGLPTRTFVLASTPGADFSPGSLQTTGRDLDV 78 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCCCCCCHHHHHHCCCCCCCCCCCCCEECCCCCCE
T ss_conf 90013668999999999998654225706789999886630--0002798405664221353678888860234873004
Q ss_pred EECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf 432750244136763-123211220156568454146885356645442100000000000024542234--------32
Q gi|254780685|r 83 ALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GK 153 (243)
Q Consensus 83 Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~--------g~ 153 (243)
T Consensus 79 A~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G-~PVlG~gGgPI~~P~P~~~~~Ig~DGTis~~p~G~~~~~~~ 157 (254)
T TIGR02490 79 ALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASG-HPVLGEGGGPITIPPPYSKIEIGADGTISVIPPGDPPNAVQ 157 (254)
T ss_pred EECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCC-CCEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCHH
T ss_conf 46488528987799586111427610165541311178-73750798614536887648871776188865888975232
Q ss_pred CCCCCCCCCCCC-HHHHHHHCCCCCCCCCC------CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112334545576-13443202565345666------56543456641562422214023999999999999999999999
Q gi|254780685|r 154 VIATMGLYSVDM-SQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL 226 (243)
Q Consensus 154 ~v~~l~l~~~~~-~~~l~~~~~~~~~~~~~------~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~ 226 (243)
T Consensus 158 ~vgrlKLV~P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv~mI~l~RqFE~Q~Km 237 (254)
T TIGR02490 158 EVGRLKLVKPDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMVSMISLSRQFEMQVKM 237 (254)
T ss_pred HCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40322345878773552425888423336877778898656688634506855477752889999999875346778899
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999985
Q gi|254780685|r 227 IDENEKSMLEAIRNI 241 (243)
Q Consensus 227 i~~~de~~~~~in~l 241 (243)
T Consensus 238 m~tA~~-na~aan~L 251 (254)
T TIGR02490 238 MKTAED-NAQAANRL 251 (254)
T ss_pred HHHHHH-HHHHHHHH
T ss_conf 987878-89999884