HHsearch alignment for GI: 254780685 and conserved domain: TIGR02490

>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00  E-value=0  Score=443.40  Aligned_cols=234  Identities=28%  Similarity=0.403  Sum_probs=211.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             69999999999999879997754317771133467879999742-04676555532111100002245554455640213
Q gi|254780685|r    4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGA-IKNDIDQKISFVASGKEYLSKEVGSFISTGTELDF   82 (243)
Q Consensus         4 ~~y~a~sg~~a~~~~ldvisNNlAN~~T~GfK~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~l~~Tg~~lD~   82 (243)
T Consensus         1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~--~Mv~G~G~ptR~~v~~~~~G~D~~~G~~~~TGR~LDv   78 (254)
T TIGR02490         1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAV--PMVDGDGLPTRTFVLASTPGADFSPGSLQTTGRDLDV   78 (254)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCCCCCCHHHHHHCCCCCCCCCCCCCEECCCCCCE
T ss_conf             90013668999999999998654225706789999886630--0002798405664221353678888860234873004


Q ss_pred             EECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf             432750244136763-123211220156568454146885356645442100000000000024542234--------32
Q gi|254780685|r   83 ALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQK--------GK  153 (243)
Q Consensus        83 Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~--------g~  153 (243)
T Consensus        79 A~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G-~PVlG~gGgPI~~P~P~~~~~Ig~DGTis~~p~G~~~~~~~  157 (254)
T TIGR02490        79 ALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASG-HPVLGEGGGPITIPPPYSKIEIGADGTISVIPPGDPPNAVQ  157 (254)
T ss_pred             EECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCC-CCEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCHH
T ss_conf             46488528987799586111427610165541311178-73750798614536887648871776188865888975232


Q ss_pred             CCCCCCCCCCCC-HHHHHHHCCCCCCCCCC------CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             112334545576-13443202565345666------56543456641562422214023999999999999999999999
Q gi|254780685|r  154 VIATMGLYSVDM-SQGFVRRENSGISPNIP------PTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTL  226 (243)
Q Consensus       154 ~v~~l~l~~~~~-~~~l~~~~~~~~~~~~~------~~~~~~~~~~~v~qG~LE~SNVn~~~EMv~lI~~qRafe~~~k~  226 (243)
T Consensus       158 ~vgrlKLV~P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv~mI~l~RqFE~Q~Km  237 (254)
T TIGR02490       158 EVGRLKLVKPDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMVSMISLSRQFEMQVKM  237 (254)
T ss_pred             HCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             40322345878773552425888423336877778898656688634506855477752889999999875346778899


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999985
Q gi|254780685|r  227 IDENEKSMLEAIRNI  241 (243)
Q Consensus       227 i~~~de~~~~~in~l  241 (243)
T Consensus       238 m~tA~~-na~aan~L  251 (254)
T TIGR02490       238 MKTAED-NAQAANRL  251 (254)
T ss_pred             HHHHHH-HHHHHHHH
T ss_conf             987878-89999884