Query gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 243
No_of_seqs 125 out of 2784
Neff 6.9
Searched_HMMs 33803
Date Wed Jun 1 14:45:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780685.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3a69_A Flagellar HOOK protein 99.8 1.1E-20 3.3E-25 141.0 4.9 93 57-184 2-95 (113)
2 >1wlg_A Flagellar HOOK protein 99.6 2E-16 6E-21 115.9 5.0 74 79-187 1-75 (83)
3 >1wlg_A Flagellar HOOK protein 89.2 0.12 3.7E-06 28.7 0.9 50 126-207 4-58 (59)
4 >2bf6_A Sialidase, EXO-alpha-s 74.2 2.6 7.8E-05 20.9 2.8 56 84-162 10-65 (67)
5 >1q7f_A NHL, brain tumor CG107 69.4 4.8 0.00014 19.3 3.2 32 77-108 59-93 (143)
6 >3lhn_A Lipoprotein; structura 62.9 9.7 0.00029 17.5 5.8 57 77-133 44-113 (126)
7 >2z2n_A Virginiamycin B lyase; 59.1 9.3 0.00028 17.6 3.1 30 78-107 3-35 (84)
8 >3hfq_A Uncharacterized protei 55.0 13 0.00039 16.7 3.3 83 78-169 3-90 (101)
9 >1xd5_A Gastrodianin-1, antifu 47.8 17 0.00051 16.0 3.4 41 79-119 20-67 (112)
10 >3hfq_A Uncharacterized protei 44.7 8 0.00024 18.0 0.9 65 105-170 24-88 (97)
11 >1ucu_A Phase 1 flagellin; fla 40.7 22 0.00066 15.4 3.1 45 193-237 30-75 (80)
12 >3d8x_A Thioredoxin reductase 38.7 12 0.00036 17.0 1.0 17 103-119 22-38 (40)
13 >2p4o_A Hypothetical protein; 36.9 26 0.00076 15.0 2.6 30 77-106 2-34 (143)
14 >1lln_A Antiviral protein 3; r 34.5 22 0.00065 15.4 1.8 24 12-35 8-31 (57)
15 >3ec1_A YQEH GTPase; atnos1, a 31.6 32 0.00093 14.5 3.3 32 72-103 91-124 (135)
16 >2p17_A Pirin-like protein; GK 30.8 32 0.00096 14.4 3.6 54 79-133 48-104 (156)
17 >2jkb_A Sialidase B; intramole 29.9 34 0.001 14.3 3.2 57 83-160 12-70 (103)
18 >3h2y_A GTPase family protein; 27.7 37 0.0011 14.1 3.3 31 71-101 91-123 (136)
19 >3fgb_A Uncharacterized protei 26.4 39 0.0012 14.0 3.8 49 66-117 26-80 (104)
20 >2btv_A T2A, T2B, protein (VP3 26.4 24 0.0007 15.2 0.9 17 74-90 8-24 (73)
21 >1yx3_A Hypothetical protein D 23.5 29 0.00084 14.7 0.8 19 100-118 25-44 (61)
22 >1uj6_A Ribose 5-phosphate iso 23.1 21 0.00061 15.6 0.1 32 103-135 28-59 (80)
23 >1ri6_A Putative isomerase YBH 22.6 46 0.0014 13.5 2.7 29 138-166 58-87 (101)
24 >1kb0_A Quinohemoprotein alcoh 22.4 47 0.0014 13.5 3.7 37 100-136 20-63 (64)
25 >2phl_A Phaseolin; plant SEED 21.0 50 0.0015 13.3 1.7 58 65-125 48-115 (202)
26 >1ory_B Flagellin; flagellar c 20.7 51 0.0015 13.3 2.1 35 203-237 16-50 (55)
No 1
>>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:48-116,A:315-358)
Probab=99.81 E-value=1.1e-20 Score=141.01 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 32111100002245554455640213432750244136763-12321122015656845414688535664544210000
Q gi|254780685|r 57 SFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 (243)
Q Consensus 57 ~~~~~~~~~~~~~~G~l~~Tg~~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~ 135 (243)
.++....++++|+||+++.|++|||+||+|+|||.|++++| ++|||+|+|++|++|+||+.+|. +||
T Consensus 2 ~Gv~~~~~~~~~~qG~l~~T~~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~ld~~G~Lvt~~G~-~vl----------- 69 (113)
T 3a69_A 2 LGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGM-QLT----------- 69 (113)
T ss_dssp ----------------------CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCC-EEE-----------
T ss_pred CCEEEEEEEEEECCCCEEECCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-----------
T ss_conf 76477679996045545762645566622786036751578600013454220478871235674-002-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 0000000024542234321123345455761344320256534566656
Q gi|254780685|r 136 KDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPT 184 (243)
Q Consensus 136 ~~~~~~i~~dG~i~~~g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~ 184 (243)
.|++|.++.+|.+.+++.|..+....
T Consensus 70 -----------------------al~~f~n~~gL~~~g~~~~~~t~~sG 95 (113)
T 3a69_A 70 -----------------------VLANFANNEGLASQGDNVWAATQASG 95 (113)
T ss_dssp -----------------------CEEECSCGGGSEECSTTCEECCTTTC
T ss_pred -----------------------CCCCCCCHHHHHHCCCCEEECCCCCC
T ss_conf -----------------------34566786774413784476133567
No 2
>>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:1-46,A:245-281)
Probab=99.63 E-value=2e-16 Score=115.91 Aligned_cols=74 Identities=20% Similarity=0.395 Sum_probs=64.0
Q ss_pred EEEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0213432750244136763-123211220156568454146885356645442100000000000024542234321123
Q gi|254780685|r 79 ELDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIAT 157 (243)
Q Consensus 79 ~lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~v~~ 157 (243)
.||+||+|+|||.|++++| ++|||+|+|++|++|+||+.+| ++|+
T Consensus 1 AlDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lv~~~G-~~vl--------------------------------- 46 (83)
T 1wlg_A 1 GLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQG-MQLT--------------------------------- 46 (83)
T ss_dssp CEECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTC-CEEE---------------------------------
T ss_pred CCCEEECCCCEEEEECCCCCEEEECCCCEEECCCCCEECCCC-CEEE---------------------------------
T ss_conf 965787587079987699988884488723989998887999-9898---------------------------------
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 345455761344320256534566656543
Q gi|254780685|r 158 MGLYSVDMSQGFVRRENSGISPNIPPTPLE 187 (243)
Q Consensus 158 l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (243)
.|+.|.||.+|.+.+++.|..+..+.++.
T Consensus 47 -~la~F~N~~GL~~~G~n~~~~T~~SG~p~ 75 (83)
T 1wlg_A 47 -VLANFANNEGLASQGDNVWAATQASGVAL 75 (83)
T ss_dssp -CEEECSCGGGSEECSTTCEECCTTTCCCE
T ss_pred -EEEECCCHHHHHHCCCCEEECCCCCCCCE
T ss_conf -99960797881311597277644578744
No 3
>>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:47-61,A:219-244,A:282-299)
Probab=89.22 E-value=0.12 Score=28.68 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 45442100000000000024542234-----3211233454557613443202565345666565434566415624222
Q gi|254780685|r 126 MASVPIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVTVKRGFLE 200 (243)
Q Consensus 126 ~~g~pI~ip~~~~~~~i~~dG~i~~~-----g~~v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~qG~LE 200 (243)
..|.|-.|..++-++.|..||++..+ .+.+++ -..++..|.||
T Consensus 4 atgtpptiqqgavsyqin~dgtvvgnysneq~q~lgq--------------------------------ifg~lt~gale 51 (59)
T 1wlg_A 4 ATGTPPTIQQGAVSYQINNDGTVVGNYSNEQEQVLGQ--------------------------------IFGKLTNGALE 51 (59)
T ss_dssp CBTTTTBCCTTCEEEEECTTCEEEEEETTSCEEEEEE--------------------------------EBCCCSSCEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEE--------------------------------ECEEEEECCEE
T ss_conf 3688862125770257447616999908983778889--------------------------------92348517442
Q ss_pred CCHHHHH
Q ss_conf 1402399
Q gi|254780685|r 201 DSNANSM 207 (243)
Q Consensus 201 ~SNVn~~ 207 (243)
.||||+.
T Consensus 52 ~snvdls 58 (59)
T 1wlg_A 52 ASNVDLS 58 (59)
T ss_dssp EC-----
T ss_pred HHHCCCC
T ss_conf 2332626
No 4
>>2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* (A:114-180)
Probab=74.19 E-value=2.6 Score=20.85 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=36.6
Q ss_pred ECCCCEEEECCCCCEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3275024413676312321122015656845414688535664544210000000000002454223432112334545
Q gi|254780685|r 84 LEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYS 162 (243)
Q Consensus 84 i~G~GfF~V~~~~g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~v~~l~l~~ 162 (243)
|+|++++.+...++..|| -.+| .|.|..+.| ..++|+.+|.++.+++.++-|-+..
T Consensus 10 Idgk~Yl~L~~~~~~~YT--------------iREG--~V~d~~g~~-------T~Y~V~~~g~l~k~g~~lGNIyl~~ 65 (67)
T 2bf6_A 10 IDGKEYLCLYDSSGKEFT--------------VREN--VVYDKDSNK-------TEYTTNALGDLFKNGTKIDNINSST 65 (67)
T ss_dssp ETTEEEEEEECTTCCEEE--------------EETT--EEECTTSCE-------EEEEECTTCEEEETTEEEEETTSSS
T ss_pred CCCCEEEEEEECCCCEEE--------------EECC--EEEECCCCC-------CEEECCCCCCCCCCCCEECCCCCCC
T ss_conf 489367999966897588--------------6367--588657884-------2020246553234670311202542
No 5
>>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} (A:1-14,A:120-248)
Probab=69.37 E-value=4.8 Score=19.33 Aligned_cols=32 Identities=6% Similarity=0.135 Sum_probs=19.5
Q ss_pred CCEEEEEECCCC-EEEECCCC-C-EEEEECCCCEE
Q ss_conf 640213432750-24413676-3-12321122015
Q gi|254780685|r 77 GTELDFALEGDA-WFALESPR-G-IILTRDGRFKV 108 (243)
Q Consensus 77 g~~lD~Ai~G~G-fF~V~~~~-g-~~yTR~G~F~~ 108 (243)
.-|.|+|++-+| ||....-+ . .+|+++|+|..
T Consensus 59 ~~P~gvai~~~g~~~~~d~~~~~v~v~~~~G~~l~ 93 (143)
T 1q7f_A 59 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR 93 (143)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE
T ss_pred CCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEE
T ss_conf 21015999604879997257418999938998798
No 6
>>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis} (A:)
Probab=62.86 E-value=9.7 Score=17.52 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=40.9
Q ss_pred CCEEEEEECCCCEEEECC----CCCEEEEECCCCEECCCCCEECCCCC---------CCCCCCCCCCCCC
Q ss_conf 640213432750244136----76312321122015656845414688---------5356645442100
Q gi|254780685|r 77 GTELDFALEGDAWFALES----PRGIILTRDGRFKVTDDGSLVSASGK---------YPVLDMASVPIQI 133 (243)
Q Consensus 77 g~~lD~Ai~G~GfF~V~~----~~g~~yTR~G~F~~d~~G~Lvt~~G~---------~~vl~~~g~pI~i 133 (243)
|-.+-+.|..+|-|.++. ....-++-.|.|+++.++..++.++. ..+||..|.||.-
T Consensus 44 GI~t~L~L~~Dgty~l~~~Yl~~~~~~~~~~G~~~~~~~~~~i~l~~~~~y~v~~~~L~~ld~~g~~i~~ 113 (126)
T 3lhn_A 44 GIQTTLTLQADNSFELKSIYLGKDESIFKVAGKFDWDSNGSKITLSDGSKYLVGENQLLXLDTEGNRITG 113 (126)
T ss_dssp EEEEEEEECTTSEEEEEEEEESTTCEEEEEEEEEEECTTSCEEEETTSCEEEEETTEEEEBCTTSCBCCS
T ss_pred CEEEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCEEEECCCCEEEECCCEEEEECCCCCCCCC
T ss_conf 8279999979998999999828899974874279992787699965998899889999985679996667
No 7
>>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265)
Probab=59.09 E-value=9.3 Score=17.62 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=16.2
Q ss_pred CEEEEEECCCCEEEECC-CCC-E-EEEECCCCE
Q ss_conf 40213432750244136-763-1-232112201
Q gi|254780685|r 78 TELDFALEGDAWFALES-PRG-I-ILTRDGRFK 107 (243)
Q Consensus 78 ~~lD~Ai~G~GfF~V~~-~~g-~-~yTR~G~F~ 107 (243)
.|..+|++.+|-+-|-+ .+. + .|+.+|.+.
T Consensus 3 ~P~gia~d~~g~i~v~d~~~~~I~~~~~~g~~~ 35 (84)
T 2z2n_A 3 GPVGITKGNDDALWFVEIIGNKIGRITTSGEIT 35 (84)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCEE
T ss_conf 013578806885899865799999990766236
No 8
>>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:186-286)
Probab=55.04 E-value=13 Score=16.74 Aligned_cols=83 Identities=8% Similarity=0.113 Sum_probs=38.4
Q ss_pred CEEEEEEC--CCCEEEECCCCCE--EEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 40213432--7502441367631--2321122015656845414688535664544210000000000002454-22343
Q gi|254780685|r 78 TELDFALE--GDAWFALESPRGI--ILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGE-ISQKG 152 (243)
Q Consensus 78 ~~lD~Ai~--G~GfF~V~~~~g~--~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~-i~~~g 152 (243)
.|..+|+. |+-+|+.-..++. .|.+ +.++.+.+..+........ +........+.+++||. ++...
T Consensus 3 ~P~~i~~spdg~~lyv~~~~~~~v~v~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~p~~i~~spdg~~lyv~~ 73 (101)
T 3hfq_A 3 GPRHLVFSPDGQYAFLAGELSSQIASLKY------DTQTGAFTQLGIVKTIPAD---YTAHNGAAAIRLSHDGHFLYVSN 73 (101)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEE------ETTTTEEEEEEEEESSCTT---CCSCCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEECCCCCEEEEECCCCEEEEEEE------ECCCCCEEEEEEEEEECCC---CCCCCCCEEEEEECCCCEEEEEE
T ss_conf 66479995145512575056530135776------1467845787662000146---78887516789927986899766
Q ss_pred CCCCCCCCCCCCCHHHH
Q ss_conf 21123345455761344
Q gi|254780685|r 153 KVIATMGLYSVDMSQGF 169 (243)
Q Consensus 153 ~~v~~l~l~~~~~~~~l 169 (243)
..-.+|.+++++.+..+
T Consensus 74 ~~~~~I~v~d~~~~~~l 90 (101)
T 3hfq_A 74 RGYNTLAVFAVTADGHL 90 (101)
T ss_dssp ETTTEEEEEEECGGGCE
T ss_pred CCCCEEEEEEECCCCCE
T ss_conf 17996999998999968
No 9
>>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} (A:)
Probab=47.80 E-value=17 Score=16.03 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=19.4
Q ss_pred EEEEEECCCCEEEECCCCCEEE-------EECCCCEECCCCCEECCCC
Q ss_conf 0213432750244136763123-------2112201565684541468
Q gi|254780685|r 79 ELDFALEGDAWFALESPRGIIL-------TRDGRFKVTDDGSLVSASG 119 (243)
Q Consensus 79 ~lD~Ai~G~GfF~V~~~~g~~y-------TR~G~F~~d~~G~Lvt~~G 119 (243)
.+-+.++.+|-|++-..+..+. -+...+.+..+|.|+-.++
T Consensus 20 ~f~l~~q~dgnLvl~~~~~~vW~a~~~~~~~~~~l~l~~dG~l~l~d~ 67 (112)
T 1xd5_A 20 GYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQNDGNLVIYSG 67 (112)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCTTSCSSEEEEECTTSCEEEEET
T ss_pred CEEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEEECCCCEEEEEC
T ss_conf 899998479988877686559986851378750899934730999807
No 10
>>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, LP_2219,NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} (A:89-185)
Probab=44.73 E-value=8 Score=18.01 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=32.9
Q ss_pred CCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 201565684541468853566454421000000000000245422343211233454557613443
Q gi|254780685|r 105 RFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFV 170 (243)
Q Consensus 105 ~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~v~~l~l~~~~~~~~l~ 170 (243)
-|.++++|.|..... ....+.+..+-+-.+....+.++++|.+....--..+|.++.++....|.
T Consensus 24 v~~i~~~G~l~~~~~-~~~~g~g~~~rq~~pH~H~v~~~p~g~~~v~dlG~D~I~~f~~~~~g~L~ 88 (97)
T 3hfq_A 24 VXKIAADGALTLTDT-VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS 88 (97)
T ss_dssp EEEECTTSCEEEEEE-EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred EECCCCCCCEEEEEE-EECCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCCCEE
T ss_conf 502368983355555-30258764113469984179804542699965899836789863664046
No 11
>>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494)
Probab=40.66 E-value=22 Score=15.36 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=34.7
Q ss_pred EEEECCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 156242221-402399999999999999999999999999999999
Q gi|254780685|r 193 TVKRGFLED-SNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 (243)
Q Consensus 193 ~v~qG~LE~-SNVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~ 237 (243)
++-.|+-=. ..+|+++||+++...|=-.|+...++..+..+-+..
T Consensus 30 rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~v 75 (80)
T 1ucu_A 30 RLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNV 75 (80)
T ss_dssp HHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 8611486478213199999999999999999999999974167899
No 12
>>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:127-138,A:256-283)
Probab=38.74 E-value=12 Score=16.97 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=13.4
Q ss_pred CCCCEECCCCCEECCCC
Q ss_conf 12201565684541468
Q gi|254780685|r 103 DGRFKVTDDGSLVSASG 119 (243)
Q Consensus 103 ~G~F~~d~~G~Lvt~~G 119 (243)
.|.+.+|++||+++..|
T Consensus 22 kGQLelDe~GYI~t~pg 38 (40)
T 3d8x_A 22 AGQVDTDEAGYIKTVPG 38 (40)
T ss_dssp TTTSCBCTTSCBCCCTT
T ss_pred HCCCEECCCCCEEECCC
T ss_conf 36526748998896899
No 13
>>2p4o_A Hypothetical protein; ZP_00111901.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.90A {Nostoc punctiforme pcc 73102} (A:71-213)
Probab=36.92 E-value=26 Score=15.01 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCEEEECC-CCC-E-EEEECCCC
Q ss_conf 640213432750244136-763-1-23211220
Q gi|254780685|r 77 GTELDFALEGDAWFALES-PRG-I-ILTRDGRF 106 (243)
Q Consensus 77 g~~lD~Ai~G~GfF~V~~-~~g-~-~yTR~G~F 106 (243)
+.|.++|++.+|.+-|-+ .++ . .|.+++..
T Consensus 2 g~P~gia~d~~g~l~v~d~~~~~i~~~d~~~~~ 34 (143)
T 2p4o_A 2 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 34 (143)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCCCEEEECCCCCEEEEECCCCEEEEECCCCCC
T ss_conf 985348988899889983478436530255443
No 14
>>1lln_A Antiviral protein 3; ribosome inactivating protein, polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A {Phytolacca americana} (A:192-248)
Probab=34.50 E-value=22 Score=15.42 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999999879997754317771133
Q gi|254780685|r 12 QLALEQRLSTVADNMSNTDTVGFR 35 (243)
Q Consensus 12 ~~a~~~~ldvisNNlAN~~T~GfK 35 (243)
.+.++..-|-+||-||-++|+|--
T Consensus 8 aisle~~wd~~s~~iakv~t~g~s 31 (57)
T 1lln_A 8 AISLEKNWDSVSXVIAKVGTSGDS 31 (57)
T ss_dssp HHHHHTTHHHHHHHHHHCCCCSSC
T ss_pred HHHHHHCHHHHHHHHHHHHCCCCC
T ss_conf 877763698880999986526997
No 15
>>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} (A:235-369)
Probab=31.61 E-value=32 Score=14.49 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCCCCCCEEEEEECCCCEEEECCCCC--EEEEEC
Q ss_conf 54455640213432750244136763--123211
Q gi|254780685|r 72 SFISTGTELDFALEGDAWFALESPRG--IILTRD 103 (243)
Q Consensus 72 ~l~~Tg~~lD~Ai~G~GfF~V~~~~g--~~yTR~ 103 (243)
.+..-....|++|.|=||+.|....- ..||=.
T Consensus 91 ~~~~~~~~~Di~i~GlGWi~i~~~~~~i~v~~P~ 124 (135)
T 3ec1_A 91 SLSVKERKTDIVFSGLGWVTCNDPGAQLVVHAPK 124 (135)
T ss_dssp EEECCSSSEEEEETTTEEEEESSSCCEEEEEEET
T ss_pred EEECCCCCEEEEEECCCEEEEECCCCEEEEEECC
T ss_conf 9704787202999178659997888289999379
No 16
>>2p17_A Pirin-like protein; GK1651, structural genomics, southeast collaboratory for structural genomics, protein structure initiative; 1.52A {Geobacillus kaustophilus HTA426} (A:1-14,A:136-277)
Probab=30.82 E-value=32 Score=14.41 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=39.6
Q ss_pred EEEEEECCCCEEEECCCCC---EEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 0213432750244136763---123211220156568454146885356645442100
Q gi|254780685|r 79 ELDFALEGDAWFALESPRG---IILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133 (243)
Q Consensus 79 ~lD~Ai~G~GfF~V~~~~g---~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~i 133 (243)
-+|+-++..+-|.+.-|.+ -.|...|...++.++.-+.. |...+++.++.+..+
T Consensus 48 ~~di~l~~g~~~t~~~~~~~~~~iyv~~G~~~i~g~~~~i~~-~~~~~l~~~~~~~~v 104 (156)
T 2p17_A 48 XVEXIVEPGTTVVQDLPGHYNGFLYILEGSGVFGADNIEGKA-GQALFFSRHNRGEET 104 (156)
T ss_dssp EEEEEECTTCEEEEEEETTCEEEEEEEESEEEETTTTEEEET-TEEEEECCCCTTCEE
T ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCC-EEEEEEECCCCCCCE
T ss_conf 655320788569875599974999997514898774112553-257886136667614
No 17
>>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* (A:342-444)
Probab=29.89 E-value=34 Score=14.32 Aligned_cols=57 Identities=16% Similarity=0.387 Sum_probs=34.6
Q ss_pred EECCCCEEEECCCC--CEEEEECCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43275024413676--3123211220156568454146885356645442100000000000024542234321123345
Q gi|254780685|r 83 ALEGDAWFALESPR--GIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGL 160 (243)
Q Consensus 83 Ai~G~GfF~V~~~~--g~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~~~~~~~i~~dG~i~~~g~~v~~l~l 160 (243)
-|+|+.++.+...+ |-. +.+.++|..-+..|+. | ..++|..+|.++++++.++-+-+
T Consensus 12 ~IdGk~Yl~L~~~~~~g~~------YTvRe~G~Vyd~~gn~--------~-------T~Y~V~~~g~lyk~g~~lgniyl 70 (103)
T 2jkb_A 12 EINGHYYLKLKKNGDNDFR------YTVRENGVVYNETTNK--------P-------TNYTINDKYEVLEGGKSLTVEQY 70 (103)
T ss_dssp ESSSSEEEEEEETTCSSCC------EEECGGGEEEETTTTE--------E-------EEEEECTTSBEEETTEECEEEEE
T ss_pred EECCCCCEEEEECCCCCCE------EEECCCCEEEECCCCC--------C-------CEEEECCCCEECCCCCCCEECCC
T ss_conf 8689862678875899877------9717998498536886--------4-------26650577535157654010255
No 18
>>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} (A:233-368)
Probab=27.72 E-value=37 Score=14.09 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCCCCCCCEEEEEECCCCEEEECCCCC--EEEE
Q ss_conf 554455640213432750244136763--1232
Q gi|254780685|r 71 GSFISTGTELDFALEGDAWFALESPRG--IILT 101 (243)
Q Consensus 71 G~l~~Tg~~lD~Ai~G~GfF~V~~~~g--~~yT 101 (243)
-.+.......|++|.|=||+.|..... ..||
T Consensus 91 ~~~~~~~~~~Divi~GlGwi~v~~~~~~i~v~~ 123 (136)
T 3h2y_A 91 YEFNIREPKTDVVFSGLGWVTVNEPGAKIVAHV 123 (136)
T ss_dssp EEEECCSSSEEEEETTTEEEEECSSCCEEEEEE
T ss_pred EEECCCCCCCEEEEECCCEEEEECCCCEEEEEE
T ss_conf 998268861108990787599838985899996
No 19
>>3fgb_A Uncharacterized protein Q89ZH8_bactn; BTR289B, NESG, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:1-42,A:300-361)
Probab=26.41 E-value=39 Score=13.95 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCCCCCCCCC----CCEEEEEECCCC-EEEECCCCCEEEEECCCCEECCC-CCEECC
Q ss_conf 02245554455----640213432750-24413676312321122015656-845414
Q gi|254780685|r 66 LSKEVGSFIST----GTELDFALEGDA-WFALESPRGIILTRDGRFKVTDD-GSLVSA 117 (243)
Q Consensus 66 ~~~~~G~l~~T----g~~lD~Ai~G~G-fF~V~~~~g~~yTR~G~F~~d~~-G~Lvt~ 117 (243)
.|.+.|++... -+|-||+|..+| |+.|.+.+.--.+ .|++|++ |.|.-.
T Consensus 26 ~d~~~g~~~~l~~~~~~PR~F~i~PdGk~L~vaNQ~Sn~I~---vF~vD~eTG~L~~~ 80 (104)
T 3fgb_A 26 FNEENGTATALSEAEVEPRNFIITPNGKYLLVACRDSNVIQ---VYERDTDTGLLTDI 80 (104)
T ss_dssp ECTTTCCEEEEEEEECSCCEEEECTTSCEEEEEETTTTEEE---EEEECTTTCCEEEC
T ss_pred EECCCCCEEEEEEEECCEEEEEEECCCCEEEEEECCCCEEE---EEEEECCCCCEEEC
T ss_conf 98999939995458758758999379999999967899199---99996898968871
No 20
>>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein, icosahedral virus; 3.50A {Bluetongue virus} (A:412-484)
Probab=26.35 E-value=24 Score=15.21 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.1
Q ss_pred CCCCCEEEEEECCCCEE
Q ss_conf 45564021343275024
Q gi|254780685|r 74 ISTGTELDFALEGDAWF 90 (243)
Q Consensus 74 ~~Tg~~lD~Ai~G~GfF 90 (243)
-+||.||||-|-+..|=
T Consensus 8 Gptg~PLDF~IGr~qyD 24 (73)
T 2btv_A 8 GPTGEPLDFQIGRNQYD 24 (73)
T ss_dssp CSSCSTTCCEETTTTEE
T ss_pred CCCCCCEEEEECCCCCC
T ss_conf 88999803785375456
No 21
>>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum} (A:1-61)
Probab=23.54 E-value=29 Score=14.75 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=11.1
Q ss_pred EEECC-CCEECCCCCEECCC
Q ss_conf 32112-20156568454146
Q gi|254780685|r 100 LTRDG-RFKVTDDGSLVSAS 118 (243)
Q Consensus 100 yTR~G-~F~~d~~G~Lvt~~ 118 (243)
++=+| .+.+|++|||++.+
T Consensus 25 levnGk~IEtDedGYL~n~~ 44 (61)
T 1yx3_A 25 IEVDGKQFAVDEEGYLSNLN 44 (61)
T ss_dssp EEETTEEEEEETTTEECCTT
T ss_pred EEECCEEEEECCCCCCCCHH
T ss_conf 77899998508876657911
No 22
>>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210)
Probab=23.11 E-value=21 Score=15.57 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=21.2
Q ss_pred CCCCEECCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 122015656845414688535664544210000
Q gi|254780685|r 103 DGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQ 135 (243)
Q Consensus 103 ~G~F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip~ 135 (243)
...++.+.+|.++|-+|+| ++|-.-.+|.-|.
T Consensus 28 ~~~lR~~~~gp~vTDnGN~-IiD~~~~~i~d~~ 59 (80)
T 1uj6_A 28 EPELRXDGDEFYFTDGGHL-IADCRFGPIGDPL 59 (80)
T ss_dssp CEEECEETTEECCCTTSCE-EEEECCCSCSCHH
T ss_pred CEEEECCCCCEEEECCCCE-EEEECCCCCCCHH
T ss_conf 6489417980289479988-9991289989999
No 23
>>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} (A:177-277)
Probab=22.64 E-value=46 Score=13.52 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCH
Q ss_conf 0000002454-2234321123345455761
Q gi|254780685|r 138 EIFNVGEKGE-ISQKGKVIATMGLYSVDMS 166 (243)
Q Consensus 138 ~~~~i~~dG~-i~~~g~~v~~l~l~~~~~~ 166 (243)
..+.+++||. ++.....-..|.+++++..
T Consensus 58 ~~i~~spdg~~lyvs~~~~~~i~v~d~~~~ 87 (101)
T 1ri6_A 58 ADIHITPDGRHLYACDRTASLITVFSVSED 87 (101)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEEEECCEEEEEECCCCCCEEEEEECCC
T ss_conf 027886301025860357894269998787
No 24
>>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} (A:314-377)
Probab=22.35 E-value=47 Score=13.49 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEECCCCEE-C-CCCCEECCCCCCC-----CCCCCCCCCCCCCC
Q ss_conf 321122015-6-5684541468853-----56645442100000
Q gi|254780685|r 100 LTRDGRFKV-T-DDGSLVSASGKYP-----VLDMASVPIQIPQK 136 (243)
Q Consensus 100 yTR~G~F~~-d-~~G~Lvt~~G~~~-----vl~~~g~pI~ip~~ 136 (243)
.+|+|.|-+ | .+|.++...=..+ -.|+.|.||..|+.
T Consensus 20 ~~knG~~yvlDR~tG~~i~~~~~v~v~w~~gidetgrP~~~p~~ 63 (64)
T 1kb0_A 20 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA 63 (64)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 04577079987688943010033566655667755665201233
No 25
>>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} (A:1-19,A:215-397)
Probab=20.98 E-value=50 Score=13.32 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCC---CCEEEEE--ECCCCEEEECCCCC----EEEEE-CCCCEECCCCCEECCCCCCCCCC
Q ss_conf 002245554455---6402134--32750244136763----12321-12201565684541468853566
Q gi|254780685|r 65 YLSKEVGSFIST---GTELDFA--LEGDAWFALESPRG----IILTR-DGRFKVTDDGSLVSASGKYPVLD 125 (243)
Q Consensus 65 ~~~~~~G~l~~T---g~~lD~A--i~G~GfF~V~~~~g----~~yTR-~G~F~~d~~G~Lvt~~G~~~vl~ 125 (243)
.++.+.|++..- -+..-+| ++|+|+|.+-.|.+ ..|-| .+.++ ..-..|-+.| +|+.-
T Consensus 48 ~~nit~gSm~~p~ynsrAt~iavV~~G~G~~Em~cPh~~~~~rsY~~~ra~l~--~g~v~VvPag-hP~~~ 115 (202)
T 2phl_A 48 SIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS--KDDVFVIPAA-YPVAI 115 (202)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE--TTCEEEECTT-CCEEE
T ss_pred EEEECCCCEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEEC--CCCEEEECCC-CEEEE
T ss_conf 43421584653257488868999961617899981799733212022312585--9868999999-92889
No 26
>>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:)
Probab=20.72 E-value=51 Score=13.28 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02399999999999999999999999999999999
Q gi|254780685|r 203 NANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEA 237 (243)
Q Consensus 203 NVn~~~EMv~lI~~qRafe~~~k~i~~~de~~~~~ 237 (243)
.+|+++||+++-..+=--|+..-++..++.+-+..
T Consensus 16 DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~v 50 (55)
T 1ory_B 16 NVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLV 50 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 05599999999999999999999999985267899
Done!