Query         gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 243
No_of_seqs    125 out of 2784
Neff          6.9 
Searched_HMMs 13730
Date          Wed Jun  1 08:35:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780685.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wlga_ b.152.1.1 (A:) Flagell  99.8   8E-22 5.9E-26  145.5   5.7  122   80-202     2-293 (293)
  2 d1eeja2 d.17.3.1 (A:1-60) Disu  67.2     1.9 0.00014   19.3   2.8   31   87-119    25-56  (60)
  3 d1t3ba2 d.17.3.1 (A:2-60) Disu  61.9     2.2 0.00016   19.0   2.4   30   87-118    24-54  (59)
  4 d1dlpa2 b.78.1.1 (A:116-235) F  18.9      22  0.0016   13.0   4.0   22   77-98     34-55  (120)
  5 d1q7fa_ b.68.9.1 (A:) Brain tu  18.7      23  0.0017   13.0   3.9   16   77-92    114-129 (279)
  6 d3ecfa1 d.17.4.21 (A:2-129) Un  13.3      31  0.0023   12.2   1.6   28   85-112    72-99  (128)
  7 d1uj4a2 d.58.40.1 (A:132-205)   12.5      21  0.0015   13.2   0.0   28  106-134    30-57  (74)
  8 d1lk5a2 d.58.40.1 (A:131-210)   11.3      32  0.0023   12.1   0.6   25  109-134    36-60  (80)
  9 d2v4jc1 d.203.1.1 (C:3-105) Ds  10.9      34  0.0025   12.0   0.7   14  106-119     9-22  (103)
 10 d1xd5a_ b.78.1.1 (A:) Gastrodi  10.6      39  0.0028   11.7   3.0   12   81-92     22-33  (112)

No 1  
>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]}
Probab=99.84  E-value=8e-22  Score=145.48  Aligned_cols=122  Identities=20%  Similarity=0.377  Sum_probs=90.6

Q ss_pred             EEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCC----C---------CCCCCC-----------
Q ss_conf             213432750244136763-123211220156568454146885356645----4---------421000-----------
Q gi|254780685|r   80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA----S---------VPIQIP-----------  134 (243)
Q Consensus        80 lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~----g---------~pI~ip-----------  134 (243)
                      |||||+|+|||.|++++| ++|||+|+|++|++|+||+.+|. .|++..    +         .||.+|           
T Consensus         2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~-~l~G~~~d~~~~~~~~~~~~~~i~i~~~~~~~~aTt~   80 (293)
T d1wlga_           2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGM-QLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTT   80 (293)
T ss_dssp             EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCC-EEEEEECBTTTTBCCTTCCCEECCCCCCCBCCBCCCE
T ss_pred             CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             647874870799876999887844887329899998839999-8985763688863125776554434443457765514


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780685|r  135 --------------------------------------------------------------------------------  134 (243)
Q Consensus       135 --------------------------------------------------------------------------------  134 (243)
                                                                                                      
T Consensus        81 ~~~~~NL~~~~~~~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~~~~~~~~l~  160 (293)
T d1wlga_          81 ASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLK  160 (293)
T ss_dssp             EEEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCSCSEEEE
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             67741664212355322223478776330113676422586422205666204654137871256644546643135653


Q ss_pred             -------------------------------------------------------CCCCCCCCCCCCCCC---CCC--CC
Q ss_conf             -------------------------------------------------------000000000245422---343--21
Q gi|254780685|r  135 -------------------------------------------------------QKDEIFNVGEKGEIS---QKG--KV  154 (243)
Q Consensus       135 -------------------------------------------------------~~~~~~~i~~dG~i~---~~g--~~  154 (243)
                                                                             -.-..+.|++||.|.   .+|  +.
T Consensus       161 F~~~G~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~~ysNG~~~~  240 (293)
T d1wlga_         161 FNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQV  240 (293)
T ss_dssp             ECTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEEEETTSCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEECCCCEEE
T ss_conf             27863222333100023441124321000252210001257400244326884311232106658758999976996789


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-C----CCCCCEEEECCCCCC
Q ss_conf             12334545576134432025653456665654-3----456641562422214
Q gi|254780685|r  155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPL-E----DLSGVTVKRGFLEDS  202 (243)
Q Consensus       155 v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~~v~qG~LE~S  202 (243)
                      ++||.|+.|.||.+|.+.+++.|..+...+.+ .    .....+|.+|+||+|
T Consensus       241 lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S  293 (293)
T d1wlga_         241 LGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS  293 (293)
T ss_dssp             EEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC
T ss_pred             EEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC
T ss_conf             88999997359687321259708760016885556899888223842613169


No 2  
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=67.18  E-value=1.9  Score=19.35  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             CCEEEECCCCCEEE-EECCCCEECCCCCEECCCC
Q ss_conf             50244136763123-2112201565684541468
Q gi|254780685|r   87 DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG  119 (243)
Q Consensus        87 ~GfF~V~~~~g~~y-TR~G~F~~d~~G~Lvt~~G  119 (243)
                      +|||.|...+|.+| +.+|.|-+.  |.|....+
T Consensus        25 ~GlyeV~~~~~i~Yvs~dG~y~i~--G~l~~l~~   56 (60)
T d1eeja2          25 AGMKTVLTNSGVLYITDDGKHIIQ--GPMYDVSG   56 (60)
T ss_dssp             TTEEEEEETTEEEEEETTSCEEEE--SCEEECSS
T ss_pred             CCEEEEEECCEEEEECCCCCEEEE--EEEEECCC
T ss_conf             984999989998999499889997--68899248


No 3  
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=61.90  E-value=2.2  Score=18.97  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             CCEEEECCCCCEEE-EECCCCEECCCCCEECCC
Q ss_conf             50244136763123-211220156568454146
Q gi|254780685|r   87 DAWFALESPRGIIL-TRDGRFKVTDDGSLVSAS  118 (243)
Q Consensus        87 ~GfF~V~~~~g~~y-TR~G~F~~d~~G~Lvt~~  118 (243)
                      +|||.|...+|.+| +.+|.|-+.  |.|....
T Consensus        24 ~GlyeV~~~~gi~Yvs~dg~y~i~--G~l~~l~   54 (59)
T d1t3ba2          24 SGIKTAVTDQGILYVSEDGKYLFE--GKLYELT   54 (59)
T ss_dssp             TTEECCEETTEECEEESSSSCEEC--SCCCCCT
T ss_pred             CCEEEEEECCEEEEECCCCCEEEE--EEEEECC
T ss_conf             974999989988998589889997--5888804


No 4  
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Probab=18.91  E-value=22  Score=13.05  Aligned_cols=22  Identities=14%  Similarity=0.086  Sum_probs=13.3

Q ss_pred             CCEEEEEECCCCEEEECCCCCE
Q ss_conf             6402134327502441367631
Q gi|254780685|r   77 GTELDFALEGDAWFALESPRGI   98 (243)
Q Consensus        77 g~~lD~Ai~G~GfF~V~~~~g~   98 (243)
                      ...+-|.|+.+|=+++..++..
T Consensus        34 ~g~y~L~~q~DGNLvL~~~~~~   55 (120)
T d1dlpa2          34 LSPYRLSMETDCNLVLFDRDDR   55 (120)
T ss_dssp             CSSCEEEEETTTEEEEEBTTBC
T ss_pred             CCCEEEEECCCCCEEEECCCCE
T ss_conf             4887999968983899649968


No 5  
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=18.66  E-value=23  Score=13.01  Aligned_cols=16  Identities=0%  Similarity=0.067  Sum_probs=7.2

Q ss_pred             CCEEEEEECCCCEEEE
Q ss_conf             6402134327502441
Q gi|254780685|r   77 GTELDFALEGDAWFAL   92 (243)
Q Consensus        77 g~~lD~Ai~G~GfF~V   92 (243)
                      ..|.++|+..+|-+.+
T Consensus       114 ~~p~~~avd~~G~i~v  129 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIV  129 (279)
T ss_dssp             SCEEEEEECTTSCEEE
T ss_pred             CCCCEECCCCCCCEEE
T ss_conf             2542000014784799


No 6  
>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193 {Anabaena variabilis [TaxId: 1172]}
Probab=13.30  E-value=31  Score=12.19  Aligned_cols=28  Identities=14%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             CCCCEEEECCCCCEEEEECCCCEECCCC
Q ss_conf             2750244136763123211220156568
Q gi|254780685|r   85 EGDAWFALESPRGIILTRDGRFKVTDDG  112 (243)
Q Consensus        85 ~G~GfF~V~~~~g~~yTR~G~F~~d~~G  112 (243)
                      ...|.|..++..|+.||----|++|++|
T Consensus        72 rAS~v~q~rTTKG~ly~l~nfF~lDEeG   99 (128)
T d3ecfa1          72 RASGVWQMRTTKGTLYTLHNFFRLDEEG   99 (128)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEETTE
T ss_pred             CCCCEEEEEECCCEEEEEEHHHEECCCC
T ss_conf             7643178874374189770011325267


No 7  
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Probab=12.49  E-value=21  Score=13.21  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=15.0

Q ss_pred             CEECCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf             01565684541468853566454421000
Q gi|254780685|r  106 FKVTDDGSLVSASGKYPVLDMASVPIQIP  134 (243)
Q Consensus       106 F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip  134 (243)
                      ++.+.++..+|-+|+| ++|-...+|.=|
T Consensus        30 lR~~~~~p~iTDnGN~-IlD~~~~~i~dp   57 (74)
T d1uj4a2          30 LRMDGDEFYFTDGGHL-IADCRFGPIGDP   57 (74)
T ss_dssp             ECEETTEECCCTTSCE-EEEECCCSCSCH
T ss_pred             EEECCCCEEEECCCCE-EEECCCCCCCCH
T ss_conf             9655995079519978-998878995999


No 8  
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.28  E-value=32  Score=12.13  Aligned_cols=25  Identities=24%  Similarity=0.599  Sum_probs=13.8

Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf             65684541468853566454421000
Q gi|254780685|r  109 TDDGSLVSASGKYPVLDMASVPIQIP  134 (243)
Q Consensus       109 d~~G~Lvt~~G~~~vl~~~g~pI~ip  134 (243)
                      +.+|..+|-+|+| ++|-...+|.-|
T Consensus        36 ~~~gp~iTDnGN~-I~D~~~~~i~~p   60 (80)
T d1lk5a2          36 NKDGPVITDNGNF-IIDAKFPRIDDP   60 (80)
T ss_dssp             SSSSBCCCTTSCE-EEEEECSCCSCH
T ss_pred             CCCCCEEECCCCE-EEECCCCCCCCH
T ss_conf             7888768259997-987888988999


No 9  
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=10.87  E-value=34  Score=11.97  Aligned_cols=14  Identities=36%  Similarity=0.636  Sum_probs=9.2

Q ss_pred             CEECCCCCEECCCC
Q ss_conf             01565684541468
Q gi|254780685|r  106 FKVTDDGSLVSASG  119 (243)
Q Consensus       106 F~~d~~G~Lvt~~G  119 (243)
                      ..+|++|||++.+-
T Consensus         9 ie~D~~GyL~~~~d   22 (103)
T d2v4jc1           9 FEVDEDGFLLRFDD   22 (103)
T ss_dssp             ECBCTTSCBSCGGG
T ss_pred             EEECCCCCCCCCCC
T ss_conf             86787755288131


No 10 
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]}
Probab=10.55  E-value=39  Score=11.66  Aligned_cols=12  Identities=25%  Similarity=0.412  Sum_probs=4.0

Q ss_pred             EEEECCCCEEEE
Q ss_conf             134327502441
Q gi|254780685|r   81 DFALEGDAWFAL   92 (243)
Q Consensus        81 D~Ai~G~GfF~V   92 (243)
                      -|-++.+|=|++
T Consensus        22 ~l~~q~DGNLvl   33 (112)
T d1xd5a_          22 LFIIQNDCNLVL   33 (112)
T ss_dssp             EEEECTTSCEEE
T ss_pred             EEEECCCCCEEE
T ss_conf             999817998898


Done!