Query gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Match_columns 243 No_of_seqs 125 out of 2784 Neff 6.9 Searched_HMMs 13730 Date Wed Jun 1 08:35:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780685.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wlga_ b.152.1.1 (A:) Flagell 99.8 8E-22 5.9E-26 145.5 5.7 122 80-202 2-293 (293) 2 d1eeja2 d.17.3.1 (A:1-60) Disu 67.2 1.9 0.00014 19.3 2.8 31 87-119 25-56 (60) 3 d1t3ba2 d.17.3.1 (A:2-60) Disu 61.9 2.2 0.00016 19.0 2.4 30 87-118 24-54 (59) 4 d1dlpa2 b.78.1.1 (A:116-235) F 18.9 22 0.0016 13.0 4.0 22 77-98 34-55 (120) 5 d1q7fa_ b.68.9.1 (A:) Brain tu 18.7 23 0.0017 13.0 3.9 16 77-92 114-129 (279) 6 d3ecfa1 d.17.4.21 (A:2-129) Un 13.3 31 0.0023 12.2 1.6 28 85-112 72-99 (128) 7 d1uj4a2 d.58.40.1 (A:132-205) 12.5 21 0.0015 13.2 0.0 28 106-134 30-57 (74) 8 d1lk5a2 d.58.40.1 (A:131-210) 11.3 32 0.0023 12.1 0.6 25 109-134 36-60 (80) 9 d2v4jc1 d.203.1.1 (C:3-105) Ds 10.9 34 0.0025 12.0 0.7 14 106-119 9-22 (103) 10 d1xd5a_ b.78.1.1 (A:) Gastrodi 10.6 39 0.0028 11.7 3.0 12 81-92 22-33 (112) No 1 >d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Probab=99.84 E-value=8e-22 Score=145.48 Aligned_cols=122 Identities=20% Similarity=0.377 Sum_probs=90.6 Q ss_pred EEEEECCCCEEEECCCCC-EEEEECCCCEECCCCCEECCCCCCCCCCCC----C---------CCCCCC----------- Q ss_conf 213432750244136763-123211220156568454146885356645----4---------421000----------- Q gi|254780685|r 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKYPVLDMA----S---------VPIQIP----------- 134 (243) Q Consensus 80 lD~Ai~G~GfF~V~~~~g-~~yTR~G~F~~d~~G~Lvt~~G~~~vl~~~----g---------~pI~ip----------- 134 (243) |||||+|+|||.|++++| ++|||+|+|++|++|+||+.+|. .|++.. + .||.+| T Consensus 2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~Lvn~~G~-~l~G~~~d~~~~~~~~~~~~~~i~i~~~~~~~~aTt~ 80 (293) T d1wlga_ 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGM-QLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTT 80 (293) T ss_dssp EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCC-EEEEEECBTTTTBCCTTCCCEECCCCCCCBCCBCCCE T ss_pred CCEEECCCEEEEEECCCCCEEEECCCCEEECCCCCEECCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE T ss_conf 647874870799876999887844887329899998839999-8985763688863125776554434443457765514 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780685|r 135 -------------------------------------------------------------------------------- 134 (243) Q Consensus 135 -------------------------------------------------------------------------------- 134 (243) T Consensus 81 ~~~~~NL~~~~~~~~~~~~~~~~~~t~~~~~s~~vyDs~G~~~~v~~~f~k~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 160 (293) T d1wlga_ 81 ASMQINLNSTDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLK 160 (293) T ss_dssp EEEEEEEETTCCCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCSCSEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEE T ss_conf 67741664212355322223478776330113676422586422205666204654137871256644546643135653 Q ss_pred -------------------------------------------------------CCCCCCCCCCCCCCC---CCC--CC Q ss_conf -------------------------------------------------------000000000245422---343--21 Q gi|254780685|r 135 -------------------------------------------------------QKDEIFNVGEKGEIS---QKG--KV 154 (243) Q Consensus 135 -------------------------------------------------------~~~~~~~i~~dG~i~---~~g--~~ 154 (243) -.-..+.|++||.|. .+| +. T Consensus 161 F~~~G~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~dG~i~~~ysNG~~~~ 240 (293) T d1wlga_ 161 FNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQV 240 (293) T ss_dssp ECTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEEEETTSCEEE T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEECCCCEEE T ss_conf 27863222333100023441124321000252210001257400244326884311232106658758999976996789 Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-C----CCCCCEEEECCCCCC Q ss_conf 12334545576134432025653456665654-3----456641562422214 Q gi|254780685|r 155 IATMGLYSVDMSQGFVRRENSGISPNIPPTPL-E----DLSGVTVKRGFLEDS 202 (243) Q Consensus 155 v~~l~l~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~~v~qG~LE~S 202 (243) ++||.|+.|.||.+|.+.+++.|..+...+.+ . .....+|.+|+||+| T Consensus 241 lgqiala~F~Np~gL~~~g~n~f~~t~~SG~~~~g~~g~~g~G~i~~g~LE~S 293 (293) T d1wlga_ 241 LGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEAS 293 (293) T ss_dssp EEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC T ss_pred EEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEECCCEECC T ss_conf 88999997359687321259708760016885556899888223842613169 No 2 >d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=67.18 E-value=1.9 Score=19.35 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=20.6 Q ss_pred CCEEEECCCCCEEE-EECCCCEECCCCCEECCCC Q ss_conf 50244136763123-2112201565684541468 Q gi|254780685|r 87 DAWFALESPRGIIL-TRDGRFKVTDDGSLVSASG 119 (243) Q Consensus 87 ~GfF~V~~~~g~~y-TR~G~F~~d~~G~Lvt~~G 119 (243) +|||.|...+|.+| +.+|.|-+. |.|....+ T Consensus 25 ~GlyeV~~~~~i~Yvs~dG~y~i~--G~l~~l~~ 56 (60) T d1eeja2 25 AGMKTVLTNSGVLYITDDGKHIIQ--GPMYDVSG 56 (60) T ss_dssp TTEEEEEETTEEEEEETTSCEEEE--SCEEECSS T ss_pred CCEEEEEECCEEEEECCCCCEEEE--EEEEECCC T ss_conf 984999989998999499889997--68899248 No 3 >d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=61.90 E-value=2.2 Score=18.97 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=19.7 Q ss_pred CCEEEECCCCCEEE-EECCCCEECCCCCEECCC Q ss_conf 50244136763123-211220156568454146 Q gi|254780685|r 87 DAWFALESPRGIIL-TRDGRFKVTDDGSLVSAS 118 (243) Q Consensus 87 ~GfF~V~~~~g~~y-TR~G~F~~d~~G~Lvt~~ 118 (243) +|||.|...+|.+| +.+|.|-+. |.|.... T Consensus 24 ~GlyeV~~~~gi~Yvs~dg~y~i~--G~l~~l~ 54 (59) T d1t3ba2 24 SGIKTAVTDQGILYVSEDGKYLFE--GKLYELT 54 (59) T ss_dssp TTEECCEETTEECEEESSSSCEEC--SCCCCCT T ss_pred CCEEEEEECCEEEEECCCCCEEEE--EEEEECC T ss_conf 974999989988998589889997--5888804 No 4 >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Probab=18.91 E-value=22 Score=13.05 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=13.3 Q ss_pred CCEEEEEECCCCEEEECCCCCE Q ss_conf 6402134327502441367631 Q gi|254780685|r 77 GTELDFALEGDAWFALESPRGI 98 (243) Q Consensus 77 g~~lD~Ai~G~GfF~V~~~~g~ 98 (243) ...+-|.|+.+|=+++..++.. T Consensus 34 ~g~y~L~~q~DGNLvL~~~~~~ 55 (120) T d1dlpa2 34 LSPYRLSMETDCNLVLFDRDDR 55 (120) T ss_dssp CSSCEEEEETTTEEEEEBTTBC T ss_pred CCCEEEEECCCCCEEEECCCCE T ss_conf 4887999968983899649968 No 5 >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=18.66 E-value=23 Score=13.01 Aligned_cols=16 Identities=0% Similarity=0.067 Sum_probs=7.2 Q ss_pred CCEEEEEECCCCEEEE Q ss_conf 6402134327502441 Q gi|254780685|r 77 GTELDFALEGDAWFAL 92 (243) Q Consensus 77 g~~lD~Ai~G~GfF~V 92 (243) ..|.++|+..+|-+.+ T Consensus 114 ~~p~~~avd~~G~i~v 129 (279) T d1q7fa_ 114 QHPRGVTVDNKGRIIV 129 (279) T ss_dssp SCEEEEEECTTSCEEE T ss_pred CCCCEECCCCCCCEEE T ss_conf 2542000014784799 No 6 >d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193 {Anabaena variabilis [TaxId: 1172]} Probab=13.30 E-value=31 Score=12.19 Aligned_cols=28 Identities=14% Similarity=0.482 Sum_probs=25.4 Q ss_pred CCCCEEEECCCCCEEEEECCCCEECCCC Q ss_conf 2750244136763123211220156568 Q gi|254780685|r 85 EGDAWFALESPRGIILTRDGRFKVTDDG 112 (243) Q Consensus 85 ~G~GfF~V~~~~g~~yTR~G~F~~d~~G 112 (243) ...|.|..++..|+.||----|++|++| T Consensus 72 rAS~v~q~rTTKG~ly~l~nfF~lDEeG 99 (128) T d3ecfa1 72 RASGVWQMRTTKGTLYTLHNFFRLDEEG 99 (128) T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEETTE T ss_pred CCCCEEEEEECCCEEEEEEHHHEECCCC T ss_conf 7643178874374189770011325267 No 7 >d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Probab=12.49 E-value=21 Score=13.21 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=15.0 Q ss_pred CEECCCCCEECCCCCCCCCCCCCCCCCCC Q ss_conf 01565684541468853566454421000 Q gi|254780685|r 106 FKVTDDGSLVSASGKYPVLDMASVPIQIP 134 (243) Q Consensus 106 F~~d~~G~Lvt~~G~~~vl~~~g~pI~ip 134 (243) ++.+.++..+|-+|+| ++|-...+|.=| T Consensus 30 lR~~~~~p~iTDnGN~-IlD~~~~~i~dp 57 (74) T d1uj4a2 30 LRMDGDEFYFTDGGHL-IADCRFGPIGDP 57 (74) T ss_dssp ECEETTEECCCTTSCE-EEEECCCSCSCH T ss_pred EEECCCCEEEECCCCE-EEECCCCCCCCH T ss_conf 9655995079519978-998878995999 No 8 >d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=11.28 E-value=32 Score=12.13 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=13.8 Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCC Q ss_conf 65684541468853566454421000 Q gi|254780685|r 109 TDDGSLVSASGKYPVLDMASVPIQIP 134 (243) Q Consensus 109 d~~G~Lvt~~G~~~vl~~~g~pI~ip 134 (243) +.+|..+|-+|+| ++|-...+|.-| T Consensus 36 ~~~gp~iTDnGN~-I~D~~~~~i~~p 60 (80) T d1lk5a2 36 NKDGPVITDNGNF-IIDAKFPRIDDP 60 (80) T ss_dssp SSSSBCCCTTSCE-EEEEECSCCSCH T ss_pred CCCCCEEECCCCE-EEECCCCCCCCH T ss_conf 7888768259997-987888988999 No 9 >d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]} Probab=10.87 E-value=34 Score=11.97 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=9.2 Q ss_pred CEECCCCCEECCCC Q ss_conf 01565684541468 Q gi|254780685|r 106 FKVTDDGSLVSASG 119 (243) Q Consensus 106 F~~d~~G~Lvt~~G 119 (243) ..+|++|||++.+- T Consensus 9 ie~D~~GyL~~~~d 22 (103) T d2v4jc1 9 FEVDEDGFLLRFDD 22 (103) T ss_dssp ECBCTTSCBSCGGG T ss_pred EEECCCCCCCCCCC T ss_conf 86787755288131 No 10 >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Probab=10.55 E-value=39 Score=11.66 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=4.0 Q ss_pred EEEECCCCEEEE Q ss_conf 134327502441 Q gi|254780685|r 81 DFALEGDAWFAL 92 (243) Q Consensus 81 D~Ai~G~GfF~V 92 (243) -|-++.+|=|++ T Consensus 22 ~l~~q~DGNLvl 33 (112) T d1xd5a_ 22 LFIIQNDCNLVL 33 (112) T ss_dssp EEEECTTSCEEE T ss_pred EEEECCCCCEEE T ss_conf 999817998898 Done!