RPSBLAST alignment for GI: 254780685 and conserved domain: TIGR03506
>gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain. Length = 231
Score = 140 bits (355), Expect = 4e-34
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 12/222 (5%)
Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63
+ L+ A L +A+N++N +T GF+ + +F +++ + Q V +
Sbjct: 2 ALYTALSGLNAQSSALDVIANNIANVNTTGFKRSRAEFQDLLSQSGSGSGQVGGGVRASG 61
Query: 64 EYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPV 123
G+ TG LD A+ GD +F ++ P G TR G F++ DG LV+ G Y +
Sbjct: 62 VAQDFSQGNLQPTGNSLDLAISGDGFFVVQGPDGTAYTRAGNFQLDADGYLVNPDG-YYL 120
Query: 124 LDMASV-PIQIPQKDEIFNVGEKGEISQK-----GKVIATMGLYSVDMSQGFVRRENSGI 177
L P+ +P ++G G +S + + L + G + +
Sbjct: 121 LAWTGSGPVTVPPDGASVSIGSDGTVSATYSNGQTVTLGQIALANFPNPDGLRKEGGNLY 180
Query: 178 SPNIPP-TPLEDLSG----VTVKRGFLEDSNANSMYEMGQMI 214
S L +G +++ G LE SN + E+ MI
Sbjct: 181 SATRDSGAALVGAAGTGGFGSIQSGALESSNVDLAAELVNMI 222