RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] (243 letters) >d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella typhimurium [TaxId: 90371]} Length = 293 Score = 42.2 bits (98), Expect = 4e-05 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 80 LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121 LD A+ + +F L G + +R+G+FK+ ++ +LV+ G Sbjct: 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQ 44 >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279 Score = 29.7 bits (66), Expect = 0.24 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%) Query: 34 FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93 + + V KI +A+ + YL + G STG L + L Sbjct: 25 YTSPVSDLDGVDYPKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLL--PLYHL- 81 Query: 94 SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141 F+ + + SG + ++P + + F Sbjct: 82 --------HAAGFEFE----VATISGLMTKFEYWAMPHKDEKVMPFFE 117 >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 Score = 29.4 bits (64), Expect = 0.25 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113 G + T +DF L SP G+ + G VT +G Sbjct: 1 GQTVLPFTGIDFRL---------SPSGVAVDSAGNVYVTSEGM 34 >d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 304 Score = 25.9 bits (56), Expect = 3.5 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%) Query: 136 KDEI--FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193 D I ++V + I +KG ++ + + VR N + T + L Sbjct: 35 TDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVR--NHLVDIAPGKTIFDYLPAKL 92 Query: 194 VKRGFLEDSNANSM 207 + + S+ Sbjct: 93 SEPKYKTQLEDRSL 106 >d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]} Length = 170 Score = 25.5 bits (56), Expect = 4.2 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%) Query: 44 VVGAIKNDIDQKI--SFVASGKEYLSKEVGSF 73 V G D K +F G+E E+GSF Sbjct: 54 VFGRAYPDSADKTLANFGWGGQENAGAEIGSF 85 >d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis [TaxId: 38902]} Length = 574 Score = 24.8 bits (53), Expect = 6.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEK 145 + + + VP+ I DEIFN G K Sbjct: 540 DEEGLFPIGGVPLGIEIADEIFNNGLK 566 >d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Score = 24.7 bits (54), Expect = 8.0 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 71 GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130 F+ L E + LE G + RD +G ++ SG P + + Sbjct: 53 HRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDC------EGRYLAPSG--PSGTLKAGK 104 Query: 131 IQIPQKDEIF 140 KDE+F Sbjct: 105 ATKVGKDELF 114 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.132 0.358 Gapped Lambda K H 0.267 0.0501 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 834,900 Number of extensions: 37042 Number of successful extensions: 66 Number of sequences better than 10.0: 1 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 8 Length of query: 243 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,268,006 Effective search space: 202880960 Effective search space used: 202880960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 52 (24.3 bits)