RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod
protein FlgF [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)



>d1wlga_ b.152.1.1 (A:) Flagellar hook protein flgE {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 293

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 80  LDFALEGDAWFALESPRG-IILTRDGRFKVTDDGSLVSASGKY 121
           LD A+  + +F L    G +  +R+G+FK+ ++ +LV+  G  
Sbjct: 2   LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQ 44


>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId:
           562]}
          Length = 279

 Score = 29.7 bits (66), Expect = 0.24
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 34  FRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKEVGSFISTGTELDFALEGDAWFALE 93
           + +       V          KI  +A+ + YL  + G   STG      L     + L 
Sbjct: 25  YTSPVSDLDGVDYPKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLL--PLYHL- 81

Query: 94  SPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQIPQKDEIFN 141
                       F+      + + SG     +  ++P +  +    F 
Sbjct: 82  --------HAAGFEFE----VATISGLMTKFEYWAMPHKDEKVMPFFE 117


>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 260

 Score = 29.4 bits (64), Expect = 0.25
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)

Query: 71  GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGS 113
           G  +   T +DF L         SP G+ +   G   VT +G 
Sbjct: 1   GQTVLPFTGIDFRL---------SPSGVAVDSAGNVYVTSEGM 34


>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 304

 Score = 25.9 bits (56), Expect = 3.5
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 136 KDEI--FNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPNIPPTPLEDLSGVT 193
            D I  ++V  +  I +KG ++  +  +        VR  N  +      T  + L    
Sbjct: 35  TDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVR--NHLVDIAPGKTIFDYLPAKL 92

Query: 194 VKRGFLEDSNANSM 207
            +  +       S+
Sbjct: 93  SEPKYKTQLEDRSL 106


>d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig
          roundworm (Ascaris suum), isoform A [TaxId: 6253]}
          Length = 170

 Score = 25.5 bits (56), Expect = 4.2
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 44 VVGAIKNDIDQKI--SFVASGKEYLSKEVGSF 73
          V G    D   K   +F   G+E    E+GSF
Sbjct: 54 VFGRAYPDSADKTLANFGWGGQENAGAEIGSF 85


>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
           [TaxId: 38902]}
          Length = 574

 Score = 24.8 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 119 GKYPVLDMASVPIQIPQKDEIFNVGEK 145
            +  +  +  VP+ I   DEIFN G K
Sbjct: 540 DEEGLFPIGGVPLGIEIADEIFNNGLK 566


>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 119

 Score = 24.7 bits (54), Expect = 8.0
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 71  GSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVP 130
             F+     L    E    + LE   G +  RD       +G  ++ SG  P   + +  
Sbjct: 53  HRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDC------EGRYLAPSG--PSGTLKAGK 104

Query: 131 IQIPQKDEIF 140
                KDE+F
Sbjct: 105 ATKVGKDELF 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.358 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 834,900
Number of extensions: 37042
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)