BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780685|ref|YP_003065098.1| flagellar basal body rod
protein FlgF [Candidatus Liberibacter asiaticus str. psy62]
(243 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 493 bits (1270), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60
MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA
Sbjct: 1 MQTSFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVA 60
Query: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120
SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK
Sbjct: 61 SGKEYLSKEVGSFISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGK 120
Query: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180
YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN
Sbjct: 121 YPVLDMASVPIQIPQKDEIFNVGEKGEISQKGKVIATMGLYSVDMSQGFVRRENSGISPN 180
Query: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240
IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN
Sbjct: 181 IPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLIDENEKSMLEAIRN 240
Query: 241 IAS 243
IAS
Sbjct: 241 IAS 243
>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
psy62]
Length = 421
Score = 59.3 bits (142), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 4 SFNIGLAAQLALEQRLSTVADNMSNTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGK 63
S ++ A R+S V+DN++N DTVG++ + FS +V ++ S+V+ G
Sbjct: 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSN-----SYVSGGL 60
Query: 64 EYLSK----EVGSFISTGTELDFALEGDAWFALESPRGI-ILTRDGRFKVTDDGSLVSAS 118
E +K E GS + T + D A++G +F ++ + LTR G F + ++G L + +
Sbjct: 61 EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120
Query: 119 G----KYPVLDMASVPI 131
G YP L AS P+
Sbjct: 121 GGVLLGYP-LKNASAPL 136
>gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
asiaticus str. psy62]
Length = 262
Score = 55.8 bits (133), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 15/169 (8%)
Query: 71 GSFISTGTELDFALEGDAWFALESP-RGIILTRDGRFKVTDDGSLVSASGK--YP--VLD 125
G + TG LD AL G WF +E+P + ++ TR G F + G LV+A G P V+
Sbjct: 85 GEVVHTGNNLDLALVGRGWFQVETPDKTVMYTRAGSFNIDSKGQLVTADGNTLVPGIVIP 144
Query: 126 MASVPIQIPQKDEIFNV-GEKGEISQKGKV-----IATMGLYSVDMSQGFVRRENSGISP 179
+ I++ + +I V G+ + G++ I GL ++ + R + P
Sbjct: 145 EETREIKVSRSGQILAVTGKNSDFQPVGQLLIANFINEAGLRNI--GDNLLARTSVSGDP 202
Query: 180 NIPPTPLEDLSGVTVKRGFLEDSNANSMYEMGQMIHLTQKFNSITTLID 228
I P +D+ VK+G+LE SN +++ E+ +MI + + + +I+
Sbjct: 203 -IISNP-DDIGFAHVKQGYLEASNVDAVKEISEMISAQRAYEMNSKVIE 249
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 25.4 bits (54), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 28 NTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE-VGSFISTGTELDFALEG 86
N D V F I+ +S ND I F + E++SK+ + S +S G+E+ +
Sbjct: 304 NIDNVHF--IQANYSMFHSVYFNDEWSNI-FTVAVPEHISKQDLPSHVSNGSEISQWIRD 360
Query: 87 DAWFALESPRGIILTRD--GRFKVTD 110
D + A + IIL D RF D
Sbjct: 361 DVFQAQREGKYIILFADDIDRFSSID 386
>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 332
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 115 VSASGKYPVLDMASVPIQIPQKDEIF 140
+S GK V+ +A PI PQK+EI
Sbjct: 12 MSGYGKSNVMFLAESPIPQPQKEEIL 37
>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Length = 910
Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 11 AQLALEQRLSTVADNMSNTDTVGFRTI 37
A+L E+R+ +AD +D G+R +
Sbjct: 285 AELVREKRIVDIADLRDESDRQGYRVV 311
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 22.3 bits (46), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 74 ISTGTELDFALEGDAWFALESPRGIILTRDGRFKVTDDGSLVSASGKYPVLDMASVPIQI 133
I+ G + F LEG + F+ S I + SL+ K + S+
Sbjct: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL--- 723
Query: 134 PQKDEIFNVGEKGEISQKGKVIATM 158
D IF++G KG Q+ K + M
Sbjct: 724 ---DTIFSIGRKGISMQRYKGLGEM 745
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,653
Number of Sequences: 1233
Number of extensions: 6216
Number of successful extensions: 20
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 10
length of query: 243
length of database: 328,796
effective HSP length: 72
effective length of query: 171
effective length of database: 240,020
effective search space: 41043420
effective search space used: 41043420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 37 (18.9 bits)