HHsearch alignment for GI: 254780687 and conserved domain: PRK05933
>PRK05933 type III secretion system protein; Validated.
Probab=99.23 E-value=1.2e-08 Score=76.02 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=158.4
Q ss_pred HHHHHCC-CEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCC-CCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9998629-807998647256679989711688639999973677-83399998878999999887278887666666565
Q gi|254780687|r 49 IFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 (318)
Q Consensus 49 ~l~~~~~-~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl-~g~~ll~id~~l~~~lid~~lGG~g~~~~~~~~R~ 126 (318)
T Consensus 42 k~~E~F~le~~el~~~~~~~l~~~~~~~~fg~h~~iq~f~a~p~~sG~f~~VtseeDlq~L~~~l~~~~S~a~~f-~ek- 119 (371)
T PRK05933 42 KIREKFRLEDVELSIESRGSLSAALAVQEFGEHFLIQPFLAQPFESGNFYFVTSEEDLQALMVAVFNDSSLASYF-YEK- 119 (371)
T ss_pred HHHHHHCCCCEEEEEEECCCCHHHHCCCCCCCCEEEEEHHCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCC-CCH-
T ss_conf 998861676417998503541010112555750575111148545575799925999999988501787663011-577-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEEEEHHHH
Q ss_conf 79899999999999999999998510027320000024431100001247871899999886667813799998504775
Q gi|254780687|r 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 (318)
Q Consensus 127 lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g~~~l~lP~~~l 206 (318)
T Consensus 120 --d~l~gF~~Yf~lE~~kl~~e-----l~~~~sLS~kv~~d~~~s~~~lqG~~--~~vDI~~~~dg~~v~~RLl~pe~~~ 190 (371)
T PRK05933 120 --DKLLGFHYYFVAEICKLLQE-----LNWIPSLSVKVTGDAAFSARSLQGSY--QVVDISLRLDGKIVRFRLLVPEDTA 190 (371)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-----CCCCCCCCEEECCCCCCCCHHCCCCE--EEEEEEEEECCCEEEEEEECCHHHH
T ss_conf --88766799999999999754-----15465657266057667712306861--7999999874847999997268999
Q ss_pred HHHHHHHHHC-C-------------------CCCCCCCHHHHHHH-----------------------------------
Q ss_conf 2567754320-2-------------------44223798999999-----------------------------------
Q gi|254780687|r 207 LKTTLISLSS-Q-------------------NKSENQSEDLIDPF----------------------------------- 231 (318)
Q Consensus 207 ~~~~~~~~~~-~-------------------~~~~~~~~~~~~~l----------------------------------- 231 (318)
T Consensus 191 qs~~~h~a~~~q~~~~~~ld~~~~i~lsvEvG~tqLsqeEW~qv~~GdFi~LDSCsyDP~~~~~~~lLti~g~~ff~gr~ 270 (371)
T PRK05933 191 QSCQKFFSEKNQSFDTHKLDKQTPITLSVEVGYCQLSQEEWHQVVPGSFILLDSCLYDPDTEESGALLTVQGHQFFGGRF 270 (371)
T ss_pred HHHHHHHHCCCCCCCCHHHCCCCCEEEEEEEEEEEECHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECCEECCCCEE
T ss_conf 99999985177245603305665259999861389749998510678579872134489876553589985686226563
Q ss_pred -------------------------HHHHHHCEEE----EEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCE
Q ss_conf -------------------------9997408007----99998123430989945799978982578997389999999
Q gi|254780687|r 232 -------------------------ARKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 (318)
Q Consensus 232 -------------------------~~~l~~~~v~----i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~ 282 (318)
T Consensus 271 ~d~~~g~fki~~~~~~~~e~p~~~~s~~~pa~pl~~~~kl~~Ev~R~~ltv~~~lkL~pGs~L~l~vhP~~GvdlilnG~ 350 (371)
T PRK05933 271 LDPQSGEFKITSYPELQQEDPPEEASESGPAAPLPGNTKLVVEVARYSLSVGEFLKLEPGSILELGVHPTLGVDIILNGA 350 (371)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCC
T ss_conf 57777705762165336457765678788988787654367786533566988733699877762577565613897252
Q ss_pred EEEEEEEEEECCEEEEEEEEC
Q ss_conf 999999987889789999842
Q gi|254780687|r 283 EIYSCELGRVGKNYTIRITDR 303 (318)
Q Consensus 283 ~~f~g~~G~~~~~~AVrI~~~ 303 (318)
T Consensus 351 kVgRgei~~lgdvLGiRVLEv 371 (371)
T PRK05933 351 KVGRGEIIALGDVLGIRVLEV 371 (371)
T ss_pred EECCCEEEEECCEEEEEEEEC
T ss_conf 641300686403002578509