HHsearch alignment for GI: 254780687 and conserved domain: PRK06789
>PRK06789 flagellar motor switch protein; Validated.
Probab=95.80 E-value=0.032 Score=33.87 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=55.0
Q ss_pred EEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEE
Q ss_conf 9812343098994579997898257899738999999999999998788978999984
Q gi|254780687|r 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 (318)
Q Consensus 245 ~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~ 302 (318)
T Consensus 1 ElG~Tkq~v~~LL~i~KGT~~RLE~ST~N~Vki~i~~~~IG~G~ILTKdGKm~V~Iv~ 58 (61)
T PRK06789 1 EIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVE 58 (61)
T ss_pred CCCCCCCHHHHHHEECCCEEEEEECCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEE
T ss_conf 9773224023341202555999733788899999826466100587028839999998