HHsearch alignment for GI: 254780687 and conserved domain: PRK06789

>PRK06789 flagellar motor switch protein; Validated.
Probab=95.80  E-value=0.032  Score=33.87  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             EEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEE
Q ss_conf             9812343098994579997898257899738999999999999998788978999984
Q gi|254780687|r  245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD  302 (318)
Q Consensus       245 ~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~  302 (318)
T Consensus         1 ElG~Tkq~v~~LL~i~KGT~~RLE~ST~N~Vki~i~~~~IG~G~ILTKdGKm~V~Iv~   58 (61)
T PRK06789          1 EIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVE   58 (61)
T ss_pred             CCCCCCCHHHHHHEECCCEEEEEECCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEE
T ss_conf             9773224023341202555999733788899999826466100587028839999998