HHsearch alignment for GI: 254780687 and conserved domain: PRK08119

>PRK08119 flagellar motor switch protein; Validated.
Probab=100.00  E-value=3.1e-36  Score=256.76  Aligned_cols=279  Identities=14%  Similarity=0.177  Sum_probs=225.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCE-EEEEEECCCCCCEEEEEECHHHHHHHHH
Q ss_conf             999999999999999999999862980799864725667998971168863-9999973677833999988789999998
Q gi|254780687|r   31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF-VFSQASLSSWSSNFFIGCSNNLVITLLE  109 (318)
Q Consensus        31 ~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~-~~~i~~~~pl~g~~ll~id~~l~~~lid  109 (318)
T Consensus        41 EkD~lGEIgNIsmGsAaTtLStLL~~kV~ITtP~Vsv~~~~el~~~~~~P~V~v~V~yteGl~G~NlLVi~~~dA~iIaD  120 (390)
T PRK08119         41 EKDALGEIGNISMGSAATALSTLLNQKVNITTPVVSVTTLEELKKEFPIPYVAVEVKYTEGLSGENLLVIKQDDAAVIAD  120 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEHHHHHHHCCCCEEEEEEEEECCCCCEEEEEECHHHHHHHHH
T ss_conf             99999988752031688899999789368778838997599998655787399999874164762799987636999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCEECCCHHHHHCHHHHCCCCCCCEEEEEE
Q ss_conf             872788876666665657989999999999999999999851002----7320000024431100001247871899999
Q gi|254780687|r  110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ----ESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN  185 (318)
Q Consensus       110 ~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~  185 (318)
T Consensus       121 LMMGGdG~~~----~~EL~EielSAv~EaMNQMmGsAATSMStmf~r~VdISPP~~~~~~~~~~~~~~~i~~~~~vV~Vs  196 (390)
T PRK08119        121 LMMGGDGTVE----DPELSEIHLSAVQEAMNQMIGSAATSMSTMFNRKVDISPPTSKILDDKEDPLTEPIPDDEDIVKVS  196 (390)
T ss_pred             HHCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf             8659999998----754219999999999999888899999998678744488720463057653212589998489999


Q ss_pred             EEEEECCE-EEEEEEEEEHHHHHHHHHHHHH-------------------------------------------------
Q ss_conf             88666781-3799998504775256775432-------------------------------------------------
Q gi|254780687|r  186 MNMTIENV-ASSFVLIIPQETLLKTTLISLS-------------------------------------------------  215 (318)
Q Consensus       186 ~~v~~~~~-~g~~~l~lP~~~l~~~~~~~~~-------------------------------------------------  215 (318)
T Consensus       197 F~l~Ig~lidS~imQi~p~~~Ak~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (390)
T PRK08119        197 FRLKIGELIDSNIMQLLPIDFAKEIVAILLGEESEEEESVEEEEASPEPEEEKATPIPVEAPKQEQQAPQPAQPPAQKRQ  276 (390)
T ss_pred             EEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98787550375122541689999999998467533343321234555555566665556664344322344565544567


Q ss_pred             ---------------CCCCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEEC
Q ss_conf             ---------------02442237989999999997408007999981234309899457999789825789973899999
Q gi|254780687|r  216 ---------------SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN  280 (318)
Q Consensus       216 ---------------~~~~~~~~~~~~~~~l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~  280 (318)
T Consensus       277 ~~~~~~~~v~v~~a~F~~~~~~~~~~~~~~~~~~~~dvpl~~~v~lg~t~~~i~~~l~l~~g~vi~l~~~~~ep~~i~vn  356 (390)
T PRK08119        277 PPAREQQPVNVQPAQFQPFDEPSLASTEPRNLDLILDVPLQITVELGRTKKSIKDILELGPGSIIELDKLAGEPVDILVN  356 (390)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEEC
T ss_conf             76544677554664445655554344551224553137528999980315679997367999779824447997699999


Q ss_pred             CEEEEEEEEEEECCEEEEEEEECCCCHHHHHHHH
Q ss_conf             9999999998788978999984258146788887
Q gi|254780687|r  281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF  314 (318)
Q Consensus       281 g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~~~  314 (318)
T Consensus       357 g~~ia~gevv~~~~~fgvrit~iv~~~~r~-~~l  389 (390)
T PRK08119        357 GKLVAKGEVVVIDENFGVRITDIVSPAERI-KNL  389 (390)
T ss_pred             CEEEEEEEEEEECCCCEEEEEEECCHHHHH-HHC
T ss_conf             999997659998884037898626989998-643