HHsearch alignment for GI: 254780687 and conserved domain: PRK08119
>PRK08119 flagellar motor switch protein; Validated.
Probab=100.00 E-value=3.1e-36 Score=256.76 Aligned_cols=279 Identities=14% Similarity=0.177 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCE-EEEEEECCCCCCEEEEEECHHHHHHHHH
Q ss_conf 999999999999999999999862980799864725667998971168863-9999973677833999988789999998
Q gi|254780687|r 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF-VFSQASLSSWSSNFFIGCSNNLVITLLE 109 (318)
Q Consensus 31 ~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~-~~~i~~~~pl~g~~ll~id~~l~~~lid 109 (318)
T Consensus 41 EkD~lGEIgNIsmGsAaTtLStLL~~kV~ITtP~Vsv~~~~el~~~~~~P~V~v~V~yteGl~G~NlLVi~~~dA~iIaD 120 (390)
T PRK08119 41 EKDALGEIGNISMGSAATALSTLLNQKVNITTPVVSVTTLEELKKEFPIPYVAVEVKYTEGLSGENLLVIKQDDAAVIAD 120 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEHHHHHHHCCCCEEEEEEEEECCCCCEEEEEECHHHHHHHHH
T ss_conf 99999988752031688899999789368778838997599998655787399999874164762799987636999999
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCEECCCHHHHHCHHHHCCCCCCCEEEEEE
Q ss_conf 872788876666665657989999999999999999999851002----7320000024431100001247871899999
Q gi|254780687|r 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ----ESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 (318)
Q Consensus 110 ~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~ 185 (318)
T Consensus 121 LMMGGdG~~~----~~EL~EielSAv~EaMNQMmGsAATSMStmf~r~VdISPP~~~~~~~~~~~~~~~i~~~~~vV~Vs 196 (390)
T PRK08119 121 LMMGGDGTVE----DPELSEIHLSAVQEAMNQMIGSAATSMSTMFNRKVDISPPTSKILDDKEDPLTEPIPDDEDIVKVS 196 (390)
T ss_pred HHCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 8659999998----754219999999999999888899999998678744488720463057653212589998489999
Q ss_pred EEEEECCE-EEEEEEEEEHHHHHHHHHHHHH-------------------------------------------------
Q ss_conf 88666781-3799998504775256775432-------------------------------------------------
Q gi|254780687|r 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLS------------------------------------------------- 215 (318)
Q Consensus 186 ~~v~~~~~-~g~~~l~lP~~~l~~~~~~~~~------------------------------------------------- 215 (318)
T Consensus 197 F~l~Ig~lidS~imQi~p~~~Ak~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (390)
T PRK08119 197 FRLKIGELIDSNIMQLLPIDFAKEIVAILLGEESEEEESVEEEEASPEPEEEKATPIPVEAPKQEQQAPQPAQPPAQKRQ 276 (390)
T ss_pred EEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98787550375122541689999999998467533343321234555555566665556664344322344565544567
Q ss_pred ---------------CCCCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEEC
Q ss_conf ---------------02442237989999999997408007999981234309899457999789825789973899999
Q gi|254780687|r 216 ---------------SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 (318)
Q Consensus 216 ---------------~~~~~~~~~~~~~~~l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~ 280 (318)
T Consensus 277 ~~~~~~~~v~v~~a~F~~~~~~~~~~~~~~~~~~~~dvpl~~~v~lg~t~~~i~~~l~l~~g~vi~l~~~~~ep~~i~vn 356 (390)
T PRK08119 277 PPAREQQPVNVQPAQFQPFDEPSLASTEPRNLDLILDVPLQITVELGRTKKSIKDILELGPGSIIELDKLAGEPVDILVN 356 (390)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEEC
T ss_conf 76544677554664445655554344551224553137528999980315679997367999779824447997699999
Q ss_pred CEEEEEEEEEEECCEEEEEEEECCCCHHHHHHHH
Q ss_conf 9999999998788978999984258146788887
Q gi|254780687|r 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 (318)
Q Consensus 281 g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~~~ 314 (318)
T Consensus 357 g~~ia~gevv~~~~~fgvrit~iv~~~~r~-~~l 389 (390)
T PRK08119 357 GKLVAKGEVVVIDENFGVRITDIVSPAERI-KNL 389 (390)
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCHHHHH-HHC
T ss_conf 999997659998884037898626989998-643