HHsearch alignment for GI: 254780687 and conserved domain: PRK08158
>PRK08158 surface presentation of antigens protein SpaO; Validated.
Probab=94.34 E-value=0.29 Score=27.62 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=42.7
Q ss_pred HHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEE
Q ss_conf 74080079999812343098994579997898257899738999999999
Q gi|254780687|r 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 (318)
Q Consensus 235 l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~ 284 (318)
T Consensus 145 ~~~lp~~l~fvLG~S~ls~~lL~~I~~GDvLlI~~~~---~~v~i~gr~i 191 (303)
T PRK08158 145 PKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLISTSR---AEVYCYAKKI 191 (303)
T ss_pred CCCCCEEEEEEEEECCCCHHHHHCCCCCCEEEEEECC---CEEEECCEEE
T ss_conf 5656268999975340789887205667589995055---1379957998