HHsearch alignment for GI: 254780687 and conserved domain: PRK08433

>PRK08433 flagellar motor switch protein; Validated.
Probab=99.68  E-value=4.4e-16  Score=124.68  Aligned_cols=76  Identities=18%  Similarity=0.293  Sum_probs=73.2

Q ss_pred             HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHH
Q ss_conf             9974080079999812343098994579997898257899738999999999999998788978999984258146
Q gi|254780687|r  233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ  308 (318)
Q Consensus       233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~  308 (318)
T Consensus        27 e~llDi~v~v~vELGrt~m~i~elL~L~~GSVIeLdk~aGEPvDI~VNgrlIArGEVVVv~e~fGVRITeIi~s~~  102 (111)
T PRK08433         27 KNLLDMEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVETYINGRIIGKGEVMVYEKNLAIRINEILDSNA  102 (111)
T ss_pred             HHHCCCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEECEEEECCEEEEEEEEEECCCC
T ss_conf             8625433899999703056899984579998899545589967999989999964789999857899999836720