HHsearch alignment for GI: 254780687 and conserved domain: PRK08433
>PRK08433 flagellar motor switch protein; Validated.
Probab=99.68 E-value=4.4e-16 Score=124.68 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=73.2
Q ss_pred HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHH
Q ss_conf 9974080079999812343098994579997898257899738999999999999998788978999984258146
Q gi|254780687|r 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 (318)
Q Consensus 233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~ 308 (318)
T Consensus 27 e~llDi~v~v~vELGrt~m~i~elL~L~~GSVIeLdk~aGEPvDI~VNgrlIArGEVVVv~e~fGVRITeIi~s~~ 102 (111)
T PRK08433 27 KNLLDMEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVETYINGRIIGKGEVMVYEKNLAIRINEILDSNA 102 (111)
T ss_pred HHHCCCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEECEEEECCEEEEEEEEEECCCC
T ss_conf 8625433899999703056899984579998899545589967999989999964789999857899999836720