HHsearch alignment for GI: 254780687 and conserved domain: PRK08916

>PRK08916 flagellar motor switch protein; Reviewed.
Probab=99.66  E-value=1.3e-15  Score=121.60  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCH
Q ss_conf             9997408007999981234309899457999789825789973899999999999999878897899998425814
Q gi|254780687|r  232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD  307 (318)
Q Consensus       232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~  307 (318)
T Consensus        37 l~~l~DIpV~vtVeLGrt~m~i~elL~L~~GsVIeLdr~~gepvdI~VNg~liArGEvVvv~d~~GVRIteIv~~e  112 (114)
T PRK08916         37 LEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGAVLELDRKVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAE  112 (114)
T ss_pred             HHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEEECCC
T ss_conf             4661467379999993126489998456999889835768995899999999998869999997889999841544