HHsearch alignment for GI: 254780687 and conserved domain: PRK08916
>PRK08916 flagellar motor switch protein; Reviewed.
Probab=99.66 E-value=1.3e-15 Score=121.60 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=73.2
Q ss_pred HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCH
Q ss_conf 9997408007999981234309899457999789825789973899999999999999878897899998425814
Q gi|254780687|r 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 (318)
Q Consensus 232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~ 307 (318)
T Consensus 37 l~~l~DIpV~vtVeLGrt~m~i~elL~L~~GsVIeLdr~~gepvdI~VNg~liArGEvVvv~d~~GVRIteIv~~e 112 (114)
T PRK08916 37 LEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGAVLELDRKVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAE 112 (114)
T ss_pred HHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEEECCC
T ss_conf 4661467379999993126489998456999889835768995899999999998869999997889999841544