HHsearch alignment for GI: 254780687 and conserved domain: PRK08983

>PRK08983 fliN flagellar motor switch protein; Validated.
Probab=99.74  E-value=5.3e-17  Score=130.71  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=76.0

Q ss_pred             HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf             99974080079999812343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r  232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL  311 (318)
Q Consensus       232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l  311 (318)
T Consensus        44 ld~llDIpv~vsVelGrt~m~i~elL~L~~GsVIeLdr~~gepvdI~VNg~liA~GEvVvv~d~fGVRIteIvs~~eR~-  122 (126)
T PRK08983         44 LDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI-  122 (126)
T ss_pred             CCEEECCCEEEEEEEECEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHH-
T ss_conf             2158705279999991217589998536999899938758995899999999999889999998899999845989988-


Q ss_pred             HHH
Q ss_conf             887
Q gi|254780687|r  312 KNF  314 (318)
Q Consensus       312 ~~~  314 (318)
T Consensus       123 ~~l  125 (126)
T PRK08983        123 KKL  125 (126)
T ss_pred             HHC
T ss_conf             643