HHsearch alignment for GI: 254780687 and conserved domain: PRK08983
>PRK08983 fliN flagellar motor switch protein; Validated.
Probab=99.74 E-value=5.3e-17 Score=130.71 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=76.0
Q ss_pred HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf 99974080079999812343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 (318)
Q Consensus 232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l 311 (318)
T Consensus 44 ld~llDIpv~vsVelGrt~m~i~elL~L~~GsVIeLdr~~gepvdI~VNg~liA~GEvVvv~d~fGVRIteIvs~~eR~- 122 (126)
T PRK08983 44 LDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI- 122 (126)
T ss_pred CCEEECCCEEEEEEEECEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCHHHHH-
T ss_conf 2158705279999991217589998536999899938758995899999999999889999998899999845989988-
Q ss_pred HHH
Q ss_conf 887
Q gi|254780687|r 312 KNF 314 (318)
Q Consensus 312 ~~~ 314 (318)
T Consensus 123 ~~l 125 (126)
T PRK08983 123 KKL 125 (126)
T ss_pred HHC
T ss_conf 643