HHsearch alignment for GI: 254780687 and conserved domain: TIGR02551
>TIGR02551 SpaO_YscQ type III secretion apparatus protein, YscQ/HrcQ family; InterPro: IPR013385 Proteins in this entry are encoded within type III secretion operons and are involved in many different functions. For example, YscQ in Yersinia is essential for YOPs secretion , while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid , and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae .; GO: 0030254 protein secretion by the type III secretion system.
Probab=99.26 E-value=5.3e-11 Score=91.36 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=67.9
Q ss_pred HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCC-CCEEEEEECCEEEEEEEEEEECCEEEEEEEE
Q ss_conf 997408007999981234309899457999789825789-9738999999999999998788978999984
Q gi|254780687|r 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 (318)
Q Consensus 233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~-~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~ 302 (318)
T Consensus 255 ~~l~~Lpv~l~fE~~r~~l~L~~L~~L~pG~vL~L~~~~~~~~V~l~~nG~~~G~GeLV~~~~~LGVri~~ 325 (326)
T TIGR02551 255 VDLDQLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVRDGPVRLRANGRLLGRGELVDVGGRLGVRILR 325 (326)
T ss_pred CCCCCCCEEEEEEEEEEEECHHHHHHCCCCCEEECCCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEE
T ss_conf 77564221599999777715799973288743216876887755899877588767789898887578740