HHsearch alignment for GI: 254780687 and conserved domain: pfam01052

>pfam01052 SpoA Surface presentation of antigens (SPOA). This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154.

Probab=99.70  E-value=2.1e-16  Score=126.85  Aligned_cols=75  Identities=28%  Similarity=0.484  Sum_probs=72.1

Q ss_pred             HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCC
Q ss_conf             999740800799998123430989945799978982578997389999999999999987889789999842581
Q gi|254780687|r  232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF  306 (318)
Q Consensus       232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~  306 (318)
T Consensus         2 ~~~l~~~~v~l~~~l~~~~l~l~~l~~L~~Gdvl~l~~~~~~~v~l~v~~~~~~~g~~g~~~~~~av~I~~~~~~   76 (77)
T pfam01052         2 AEELSDVPVELEAVLGRTELTLGELLNLKVGDVIPLDKPAEDPVELYVNGRPIFRGELGVIGGKLAVRITELLEP   76 (77)
T ss_pred             HHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEEECC
T ss_conf             527617838999999510878999845899999994898999779999999999999999999999999984089