HHsearch alignment for GI: 254780687 and conserved domain: pfam02154
>pfam02154 FliM Flagellar motor switch protein FliM.
Probab=100.00 E-value=1.5e-38 Score=271.82 Aligned_cols=183 Identities=11% Similarity=0.166 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHH
Q ss_conf 66799999999999999999999986298079986472566799897116886399999736778339999887899999
Q gi|254780687|r 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 (318)
Q Consensus 28 ~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~l 107 (318)
T Consensus 10 s~~~l~~Le~i~e~far~~~~~L~~~lr~~~~v~~~~i~~~~~~ef~~slp~ps~~~i~~~~pl~g~~l~~id~~l~~~~ 89 (192)
T pfam02154 10 SKEQLRTLEIIHERFARLMTTSLSNLLRSMVEVSVASVDQMTYGEFIRSIPVPTILNVFRMKPLKGTGLLEVDPSIAFII 89 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEHHHHHHHCCCCEEEEEEEECCCCCEEEEEECHHHHHHH
T ss_conf 65363699999999999999999998589748998021898899998518987199999845767559999998999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEE
Q ss_conf 98872788876666665657989999999999999999999851002732000002443110000124787189999988
Q gi|254780687|r 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 (318)
Q Consensus 108 id~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~ 187 (318)
T Consensus 90 vd~~lGG~g~~~~-~~~R~~T~iE~~i~~~i~~~~~~~l~~aw~~v~~~~~~~~~~Et--np~~~~i~~~~e~viv~~f~ 166 (192)
T pfam02154 90 VDRLFGGDGRFHA-KEGREFTDIERRVIQRMLKRVLENYKEAWSPVVDLEPEYDRSEV--NPQFAQIVSPNEIVVLVSLE 166 (192)
T ss_pred HHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC--CCHHHCCCCCCCEEEEEEEE
T ss_conf 9997299887778-77887878999999999999999999984210310379998646--81122227998769999999
Q ss_pred EEECCEEEEEEEEEEHHHHHHHHHHH
Q ss_conf 66678137999985047752567754
Q gi|254780687|r 188 MTIENVASSFVLIIPQETLLKTTLIS 213 (318)
Q Consensus 188 v~~~~~~g~~~l~lP~~~l~~~~~~~ 213 (318)
T Consensus 167 v~i~~~~g~~~i~iP~~~Lepi~~~L 192 (192)
T pfam02154 167 IEIGERGGMMNLCLPYITIEPIRSKL 192 (192)
T ss_pred EEECCCCEEEEEEEEHHHHHHHHHHC
T ss_conf 99889624999996088788788539