HHsearch alignment of GI: 254780687 and MMDB domain: 2hp7_A_
>2hp7_A (A:) Flagellar motor switch protein FLIM; bacterial chemotaxis, flagellar switch complex, signaling protein; 2.00A {Thermotoga maritima}
Probab=99.94 E-value=7.5e-24 Score=175.15 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHH
Q ss_conf 66799999999999999999999986298079986472566799897116886399999736778339999887899999
Q gi|254780687|r 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 (318)
Q Consensus 28 ~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~l 107 (318)
.....++++.++++|++.++..|+++++..+++++ ++++.+|+||++.+++++++.+...++|+|.+++.++.++++.+
T Consensus 5 s~~~l~~L~~i~~~~~~~~~~~L~~ll~~~v~i~v-~i~~~~~~e~~~~~~~~~~v~~~~~~~~~g~~~l~~~~~~~~~l 83 (183)
T 2hp7_A 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTM 83 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEE-EEEEEEHHHHHHHSCSSCEEEEEEETTCSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEEEHHHHHHCCCCCEEEEEEEECCCCCEEEEEECHHHHHHH
T ss_conf 46575799999999999999999998588837998-04887699998408997279998605678629999886999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEE
Q ss_conf 98872788876666665657989999999999999999999851002732000002443110000124787189999988
Q gi|254780687|r 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 (318)
Q Consensus 108 id~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~ 187 (318)
+|+||||.|... +.|+||++|+++++++++.++.++..+|++..++++.+..++. +++..+...+++.++.++|+
T Consensus 84 v~~llGg~~~~~---~~~~lt~~E~~~l~ei~n~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (183)
T 2hp7_A 84 LDIIMGGPGENP---PNRPPTEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 158 (183)
T ss_dssp HHHHHTCC-------CCSCCCHHHHHHHHHHHHHHHHHHHHHTHHHHCCCEEEEEEES--CGGGCCSSCTTSEEEEEEEE
T ss_pred HHHHCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHC--CHHHHCCCCCCCEEEEEEEE
T ss_conf 999748999888---9886758889999999999999999998643446611110212--85765248999849999999
Q ss_pred EEECCEEEEEEEEEEHHHHHHHHHH
Q ss_conf 6667813799998504775256775
Q gi|254780687|r 188 MTIENVASSFVLIIPQETLLKTTLI 212 (318)
Q Consensus 188 v~~~~~~g~~~l~lP~~~l~~~~~~ 212 (318)
++.++..|.+.+|+|++++++++.+
T Consensus 159 i~~~~~~~~~~i~~p~~~l~~l~~k 183 (183)
T 2hp7_A 159 VSWGEFTSFINVCWPFSLLEPLLEK 183 (183)
T ss_dssp EEETTEEEEEEEEEEHHHHHHHHHC
T ss_pred EEECCCCEEEEEEEHHHHHHHHCCC
T ss_conf 9989954089998638841534069