Query gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 318 No_of_seqs 160 out of 776 Neff 8.3 Searched_HMMs 33803 Date Wed Jun 1 15:18:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780687.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2hp7_A Flagellar motor switch 99.9 7.5E-24 2.2E-28 175.1 22.6 179 28-212 5-183 (183) 2 >1o9y_A HRCQ2; secretory prote 99.7 1.6E-17 4.8E-22 133.6 11.2 82 225-306 2-83 (84) 3 >1o6a_A Putative flagelar moto 99.7 3.8E-16 1.1E-20 124.7 10.9 72 239-310 1-72 (77) 4 >1xkr_A Chemotaxis protein CHE 99.5 8.5E-11 2.5E-15 89.6 22.3 181 29-214 6-203 (206) 5 >3hzh_B Chemotaxis operon prot 99.0 8.4E-10 2.5E-14 83.1 6.4 157 38-202 12-169 (172) 6 >3h2d_A CHEC-like superfamily 97.5 0.0054 1.6E-07 38.5 13.0 148 37-201 5-153 (155) 7 >3hm4_A Chemotaxis protein CHE 97.5 0.0031 9.3E-08 40.0 11.5 145 37-197 8-153 (156) 8 >1squ_A CHEX protein; alpha-be 97.1 0.022 6.6E-07 34.4 16.1 114 37-165 4-118 (155) 9 >1wpg_A Sarcoplasmic/endoplasm 29.7 31 0.00091 13.9 2.3 21 257-277 46-66 (130) 10 >2kij_A Copper-transporting AT 29.1 31 0.00092 13.8 1.9 21 256-276 39-59 (124) 11 >2isb_A Fumarase, FUM-1; NP_06 27.0 34 0.001 13.6 1.7 20 249-268 21-40 (192) 12 >1xne_A Hypothetical protein P 26.3 35 0.001 13.5 2.6 16 255-270 31-46 (113) 13 >2zxe_A Na, K-ATPase alpha sub 25.4 37 0.0011 13.4 2.3 23 255-277 102-124 (184) 14 >1wru_A 43 kDa tail protein; b 24.0 39 0.0012 13.2 4.0 31 179-209 156-188 (224) 15 >3ixz_A Potassium-transporting 23.8 17 0.0005 15.6 -0.3 25 245-269 21-45 (104) 16 >3cnr_A Type IV fimbriae assem 23.5 40 0.0012 13.1 2.6 60 257-316 40-105 (117) 17 >3h0g_E DNA-directed RNA polym 21.0 45 0.0013 12.8 2.2 20 252-271 40-59 (72) 18 >1sd4_A Penicillinase represso 20.0 47 0.0014 12.7 1.8 39 103-141 9-49 (53) No 1 >>2hp7_A Flagellar motor switch protein FLIM; bacterial chemotaxis, flagellar switch complex, signaling protein; 2.00A {Thermotoga maritima} (A:) Probab=99.94 E-value=7.5e-24 Score=175.15 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=167.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHH Q ss_conf 66799999999999999999999986298079986472566799897116886399999736778339999887899999 Q gi|254780687|r 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 (318) Q Consensus 28 ~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~l 107 (318) .....++++.++++|++.++..|+++++..+++++ ++++.+|+||++.+++++++.+...++|+|.+++.++.++++.+ T Consensus 5 s~~~l~~L~~i~~~~~~~~~~~L~~ll~~~v~i~v-~i~~~~~~e~~~~~~~~~~v~~~~~~~~~g~~~l~~~~~~~~~l 83 (183) T 2hp7_A 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTM 83 (183) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEE-EEEEEEHHHHHHHSCSSCEEEEEEETTCSSCEEEEECHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEEEHHHHHHCCCCCEEEEEEEECCCCCEEEEEECHHHHHHH T ss_conf 46575799999999999999999998588837998-04887699998408997279998605678629999886999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEE Q ss_conf 98872788876666665657989999999999999999999851002732000002443110000124787189999988 Q gi|254780687|r 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 (318) Q Consensus 108 id~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~ 187 (318) +|+||||.|... +.|+||++|+++++++++.++.++..+|++..++++.+..++. +++..+...+++.++.++|+ T Consensus 84 v~~llGg~~~~~---~~~~lt~~E~~~l~ei~n~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (183) T 2hp7_A 84 LDIIMGGPGENP---PNRPPTEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 158 (183) T ss_dssp HHHHHTCC-------CCSCCCHHHHHHHHHHHHHHHHHHHHHTHHHHCCCEEEEEEES--CGGGCCSSCTTSEEEEEEEE T ss_pred HHHHCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHC--CHHHHCCCCCCCEEEEEEEE T ss_conf 999748999888---9886758889999999999999999998643446611110212--85765248999849999999 Q ss_pred EEECCEEEEEEEEEEHHHHHHHHHH Q ss_conf 6667813799998504775256775 Q gi|254780687|r 188 MTIENVASSFVLIIPQETLLKTTLI 212 (318) Q Consensus 188 v~~~~~~g~~~l~lP~~~l~~~~~~ 212 (318) ++.++..|.+.+|+|++++++++.+ T Consensus 159 i~~~~~~~~~~i~~p~~~l~~l~~k 183 (183) T 2hp7_A 159 VSWGEFTSFINVCWPFSLLEPLLEK 183 (183) T ss_dssp EEETTEEEEEEEEEEHHHHHHHHHC T ss_pred EEECCCCEEEEEEEHHHHHHHHCCC T ss_conf 9989954089998638841534069 No 2 >>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} (A:) Probab=99.75 E-value=1.6e-17 Score=133.61 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=79.4 Q ss_pred HHHHHHHHHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECC Q ss_conf 89999999997408007999981234309899457999789825789973899999999999999878897899998425 Q gi|254780687|r 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 (318) Q Consensus 225 ~~~~~~l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i 304 (318) +.|...+.+.+.+++++++++||+.+++++|+++|++||||||+.+.+++++++|||+++|+|++|++|++|||||++.+ T Consensus 2 ~~~~~~l~~~l~~~~v~l~~~l~~~~l~l~el~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i 81 (84) T 1o9y_A 2 AMDPQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRLGLQITRLV 81 (84) T ss_dssp ---------CCTTCEEEEEEEEEEEEEEHHHHHTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEEC T ss_pred CCCCCCCHHHHHCCCEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEEE T ss_conf 88831265577268479999990138579999518999999907778998999998899999979999999999999900 Q ss_pred CC Q ss_conf 81 Q gi|254780687|r 305 NF 306 (318) Q Consensus 305 ~~ 306 (318) ++ T Consensus 82 ~~ 83 (84) T 1o9y_A 82 TR 83 (84) T ss_dssp -- T ss_pred EC T ss_conf 07 No 3 >>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} (A:20-96) Probab=99.68 E-value=3.8e-16 Score=124.69 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=69.4 Q ss_pred EEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHH Q ss_conf 007999981234309899457999789825789973899999999999999878897899998425814678 Q gi|254780687|r 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 (318) Q Consensus 239 ~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~ 310 (318) ||+++|+||+++|+++++++|++||||+|+.++++++.++|||+++|+|++|.++++|||||++.+.+++++ T Consensus 1 Pv~l~~~lg~~~~tl~ell~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~~~~~~~~ 72 (77) T 1o6a_A 1 PLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKERL 72 (77) T ss_dssp EEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHHH T ss_pred CEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHHH T ss_conf 279999993118449998458999999867979997899999999999999999999999998832948998 No 4 >>1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase, attractant; 1.75A {Thermotoga maritima} (A:) Probab=99.48 E-value=8.5e-11 Score=89.61 Aligned_cols=181 Identities=11% Similarity=0.060 Sum_probs=146.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCE---EEEEEE-CCCCCCEEEEEECHHHH Q ss_conf 67999999999999999999999862980799864725667998971168863---999997-36778339999887899 Q gi|254780687|r 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF---VFSQAS-LSSWSSNFFIGCSNNLV 104 (318) Q Consensus 29 ~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~---~~~i~~-~~pl~g~~ll~id~~l~ 104 (318) ....++++++..-+++..+.+|++.++..+++++..++..+++|+...++.+. +...+. .+++.|..++.++...+ T Consensus 6 ~~~~d~l~Ei~n~~~~~aa~~Ls~ll~~~v~i~vp~i~~~~~~el~~~~~~~~~~~~~v~i~~~G~~~G~~~l~~~~~~a 85 (206) T 1xkr_A 6 ERQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVGVKMPVTGDIEGSVLLIMGTTVV 85 (206) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEECCCEEEEEGGGGGGGSSCTTCEEEEEEEEEEESSCEEEEEEECHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECHHHH T ss_conf 99999999999998779999999985995999789799961999998846866419999998661645489999888999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH---------HCHHHHCCC Q ss_conf 99998872788876666665657989999999999999999999851002732000002443---------110000124 Q gi|254780687|r 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI---------DYLKKNTNR 175 (318) Q Consensus 105 ~~lid~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 175 (318) ..+++.|+|+.+.. .+++++.++..+..+.+.+..++..+|+...+....+..|... ......... T Consensus 86 ~~l~~~llg~~~~~-----~~e~~e~~~~ai~Ei~Nii~g~~~~~l~~~l~~~i~~~~P~~~~~~~~~i~~~~~~~~~~~ 160 (206) T 1xkr_A 86 KKILEILTGRAPDN-----LLNLDEFSASALREIGNIMCGTYVSALADFLGFKIDTLPPQLVIDMISAIFAEASIEELED 160 (206) T ss_dssp HHHHHHHHSCCCSC-----STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCEEEEEEHHHHHHHHHHHHHSS T ss_pred HHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHHCCHHHHHHHCC T ss_conf 99999857999876-----6541488999999999999999999999976987756699877246053326777755404 Q ss_pred CCCCEEEEEEEEEEECC----EEEEEEEEEEHHHHHHHHHHHH Q ss_conf 78718999998866678----1379999850477525677543 Q gi|254780687|r 176 LSNEFVTTINMNMTIEN----VASSFVLIIPQETLLKTTLISL 214 (318) Q Consensus 176 ~p~e~vi~i~~~v~~~~----~~g~~~l~lP~~~l~~~~~~~~ 214 (318) .+++.++.+.+.+.+++ ..+.+.+|++...+++....+. T Consensus 161 ~~~~~~~~i~~~~~i~~~~~~~~~~~~~l~~~~~~~~l~~~l~ 203 (206) T 1xkr_A 161 NSEDQIVFVETLLKVEEEEEPLTSYMMMIPKPGYLVKIFERMG 203 (206) T ss_dssp CCCCEEEEEEEEEEETTSSSCEEEEEEEEECTTHHHHHHHTTC T ss_pred CCCCEEEEEEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHCC T ss_conf 7886599999999986214511799999159899999999728 No 5 >>3hzh_B Chemotaxis operon protein (CHEX); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} (B:) Probab=98.99 E-value=8.4e-10 Score=83.08 Aligned_cols=157 Identities=7% Similarity=-0.062 Sum_probs=124.8 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCCC Q ss_conf 99999999999999862980799864725667998971168863999997367783399998878999999887278887 Q gi|254780687|r 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 (318) Q Consensus 38 ~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~lid~~lGG~g~ 117 (318) +.+.+.+.+..++++.++..+.+++..++...+.++...++..++..-+. .++.|..++.++...+..+++.|+||.+. T Consensus 12 ~~~e~~n~~~~a~~~~l~~~~~i~v~~~~~~~~~~~~~~~~~~~~~i~~~-G~~~G~~~l~~~~~~a~~l~~~mlg~~~~ 90 (172) T 3hzh_B 12 SRIDYIEPFLDAASSVLRDXLLVENIEXGKPGLKSINQKIKGVSVIVGLA-GSVEGSIIIDXDIETALFVASKLNFEEYD 90 (172) T ss_dssp -CCCCHHHHHHHHHHHHHHHSCSSCCEECCCBSSCC----CCEEEEEEEE-ESSCEEEEEEECHHHHHHHHHHHHTSCCC T ss_pred CCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEEEEEEEE-ECCCEEEEEEECHHHHHHHHHHHCCCCCC T ss_conf 43377388899999999998688744568753135567789889999985-44567999998999999999997499876 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCEEEE Q ss_conf 666666565798999999999999999999985100-2732000002443110000124787189999988666781379 Q gi|254780687|r 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT-QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 (318) Q Consensus 118 ~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g~ 196 (318) .. +.+++++.++..+..+.+.+..++...|+.. ..+.+.. |... .....++..+++.++.+.|.+..++ ... T Consensus 91 ~~---~~~~~~e~~~~ai~Ei~Nii~G~~~~~ls~~~~~i~~s~--P~~~-~~~~~~i~~~~~~~~~i~~~~~~g~-~~~ 163 (172) T 3hzh_B 91 DF---DDEETKEXVAATLTEVGNIIAGNFVTTLHAKGFVFDITP--PAFI-YGENXKISNKGSEALIVPFSLPDGK-IIE 163 (172) T ss_dssp CT---TSTTHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCEEECC--CEEE-CSCSSCCCCCSSCEEEEEEECSSSC-EEE T ss_pred CC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC--CEEE-ECCCEEEECCCCCEEEEEEECCCCC-EEE T ss_conf 78---752102889999999999999999999986698387219--9899-5798077418997899999825698-899 Q ss_pred EEEEEE Q ss_conf 999850 Q gi|254780687|r 197 FVLIIP 202 (318) Q Consensus 197 ~~l~lP 202 (318) +++|+. T Consensus 164 i~i~~~ 169 (172) T 3hzh_B 164 VNIAIR 169 (172) T ss_dssp EEEEEC T ss_pred EEEEEE T ss_conf 999986 No 6 >>3h2d_A CHEC-like superfamily protein; NP_719446.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Shewanella oneidensis mr-1} PDB: 3iic_A* (A:) Probab=97.51 E-value=0.0054 Score=38.49 Aligned_cols=148 Identities=7% Similarity=0.050 Sum_probs=102.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEEC-CCCCCEEEEEECHHHHHHHHHHHHCCC Q ss_conf 9999999999999998629807998647256679989711688639999973-677833999988789999998872788 Q gi|254780687|r 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGAS 115 (318) Q Consensus 37 ~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~-~pl~g~~ll~id~~l~~~lid~~lGG~ 115 (318) ++...+.......|++.++..+.++...++.. ...+.+.+.++... ..++|..++.++...+..++..++|++ T Consensus 5 Ei~n~~~~~a~~~l~~~~~~~v~~~~p~i~~~------~~~~~~~~~v~~~~~G~~~G~~~l~~~~~~a~~la~~l~g~e 78 (155) T 3h2d_A 5 NFINPFLQSLLNVISTXASLELTPGKPQIKTD------NLAKGDVSGLIGXVGPQTKGSLSITFEQKLVLQIXQNXLGEN 78 (155) T ss_dssp HHHHHHHHHHHHHHHTTGGGCCEECCCEECCC------SCCCEEEEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC------CCCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHCCC T ss_conf 99889999999999998589854277553224------566783999999873864389999939999999999961999 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCEEE Q ss_conf 87666666565798999999999999999999985100273200000244311000012478718999998866678137 Q gi|254780687|r 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 (318) Q Consensus 116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g 195 (318) . .++.+.....+..+.+.+..+....|+... +...+..|..............+...+.+.|..+.+... T Consensus 79 ~--------~~~de~~~dai~El~Nii~G~~~~~l~~~~-~~i~~spP~v~~g~~~~i~~~~~~~~~~~~f~~~~~~~~- 148 (155) T 3h2d_A 79 P--------GKINEEVTDLVGEITNXVTGGAKNLLGQKG-YEFEXATPXVVSGQGHTISHKANGTKIIXPFTSSYGTAF- 148 (155) T ss_dssp C--------SSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEECCCEEEEEEEEEEEECCSSCEEEEEEEETTEEEE- T ss_pred C--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEECCCCEEEECCCCEEECCCCCCEEEEEEEECCCCEE- T ss_conf 8--------872688999999999999999999998579-816505997993798256317899589999994697299- Q ss_pred EEEEEE Q ss_conf 999985 Q gi|254780687|r 196 SFVLII 201 (318) Q Consensus 196 ~~~l~l 201 (318) +++++ T Consensus 149 -i~l~~ 153 (155) T 3h2d_A 149 -IEVCF 153 (155) T ss_dssp -EEEEE T ss_pred -EEEEE T ss_conf -99995 No 7 >>3hm4_A Chemotaxis protein CHEX; YP_386777.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.30A {Desulfovibrio desulfuricans subsp} PDB: 3h4y_A* (A:) Probab=97.49 E-value=0.0031 Score=40.02 Aligned_cols=145 Identities=8% Similarity=0.047 Sum_probs=101.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEE-CCCCCCEEEEEECHHHHHHHHHHHHCCC Q ss_conf 999999999999999862980799864725667998971168863999997-3677833999988789999998872788 Q gi|254780687|r 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGAS 115 (318) Q Consensus 37 ~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~-~~pl~g~~ll~id~~l~~~lid~~lGG~ 115 (318) .+...+.......|++.++..++++...++.. ....+.+.+... ..++.|..++.++...+..+++.++|.+ T Consensus 8 ei~n~~~~~a~~~l~~~~~~~v~~~~~~~~~~-------~~~~~~v~v~i~~~G~~~G~~~l~~~~~~a~~la~~~~g~~ 80 (156) T 3hm4_A 8 EIAKPFVTATTNVLSTXAGIQPIPGQPYVKKN-------NVAKGDVSAVVGITGHKNGSISVTFTKQCAIAVVKAXLGDD 80 (156) T ss_dssp GGHHHHHHHHHHHHHHHHCCCCEECCCEECCS-------SCEEEEEEEEEEEESSSCEEEEEEECHHHHHHHHHHHHCSS T ss_pred EEHHHHHHHHHHHHHHHHCCCCCCCCCEECCC-------CCCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHHHHCCCC T ss_conf 56488999999999998688743177665156-------67788789999960166379999988999999999971999 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCEEE Q ss_conf 87666666565798999999999999999999985100273200000244311000012478718999998866678137 Q gi|254780687|r 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 (318) Q Consensus 116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g 195 (318) . .++++..+..+..+.+.+.......++... .+..+..|.........-...+....+.+.|.++.+.... T Consensus 81 ~--------~~~de~~~dal~Ei~Nii~G~~~~~l~~~~-~~~~~s~P~v~~g~~~~i~~~~~~~~~~i~f~~~~~~~~~ 151 (156) T 3hm4_A 81 I--------QDIIQDTKDAVGEVTNXISGQARAALSEXG-XTFQGATPSVIXGDGHTISHVTKSPVIAIPFKTNHGEFTV 151 (156) T ss_dssp C--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEECCCEEEEEEEEEEEECCSSCCEEEEEECTTCCEEE T ss_pred C--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEECCCEEEECCCCEEEECCCCCEEEEEEEECCCEEEE T ss_conf 7--------652488999999999998999999998679-8275269938947983454168997899999966987999 Q ss_pred EE Q ss_conf 99 Q gi|254780687|r 196 SF 197 (318) Q Consensus 196 ~~ 197 (318) .+ T Consensus 152 ~i 153 (156) T 3hm4_A 152 EF 153 (156) T ss_dssp EE T ss_pred EE T ss_conf 99 No 8 >>1squ_A CHEX protein; alpha-beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Thermotoga maritima} (A:) Probab=97.09 E-value=0.022 Score=34.44 Aligned_cols=114 Identities=5% Similarity=0.002 Sum_probs=86.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEE-CCCCCCEEEEEECHHHHHHHHHHHHCCC Q ss_conf 999999999999999862980799864725667998971168863999997-3677833999988789999998872788 Q gi|254780687|r 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGAS 115 (318) Q Consensus 37 ~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~-~~pl~g~~ll~id~~l~~~lid~~lGG~ 115 (318) .+...+....+..|++.++..+.++...++.. ....+.+.+.+. ...+.|..++.++...+..+++.|+|+. T Consensus 4 e~~n~~~~~~~~~l~~~~~~~i~~~~~~~~~~-------~~~~~~v~~~i~~~G~~~G~~~l~~~~~~a~~i~~~m~g~~ 76 (155) T 1squ_A 4 RIVNALIGSVYETIRDVLGIEPKTGKPSTVSH-------IEIPHSLVTVIGITGGIEGSLIYSFSSETALKVVSAMMGGM 76 (155) T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEECCCEECSS-------BCCCSSEEEEEEEEESCCEEEEEEECHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCEEEEC-------CCCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHCCC T ss_conf 99999999999999998699844078467503-------56678789999980375079999988999999999973899 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHH Q ss_conf 87666666565798999999999999999999985100273200000244 Q gi|254780687|r 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 (318) Q Consensus 116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~ 165 (318) .. -++.+.....+..+.+.+..+....++... ....+..|.. T Consensus 77 ~~-------~~~~e~~~dal~Ei~Nii~G~~~~~l~~~g-~~i~~spP~~ 118 (155) T 1squ_A 77 EY-------NQLDELALSAIGELGNMTAGKLAMKLEHLG-KHVDITPPTV 118 (155) T ss_dssp CC-------CSCCHHHHHHHHHHHHHHHHHHHHHHHTTS-CCEEECCCEE T ss_pred CC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEECCCEE T ss_conf 87-------640488999999999999999999998679-8598329969 No 9 >>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} (A:1-21,A:119-227) Probab=29.66 E-value=31 Score=13.86 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=10.5 Q ss_pred HCCCCCCEEECCCCCCCEEEE Q ss_conf 457999789825789973899 Q gi|254780687|r 257 VTLKIGQVIPFLHREKTCAIL 277 (318) Q Consensus 257 l~L~vGDVI~L~~~~~~~v~v 277 (318) -+|.+||+|.|.....-|+|. T Consensus 46 ~eLv~GDII~l~~Gd~IPaDg 66 (130) T 1wpg_A 46 RDIVPGDIVEVAVGDKVPADI 66 (130) T ss_dssp GGCCTTCEEEEETTCBCCSEE T ss_pred HHCCCCCEEEECCCCEEEEEE T ss_conf 998808589999989996238 No 10 >>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} (A:) Probab=29.07 E-value=31 Score=13.84 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=9.8 Q ss_pred HHCCCCCCEEECCCCCCCEEE Q ss_conf 945799978982578997389 Q gi|254780687|r 256 VVTLKIGQVIPFLHREKTCAI 276 (318) Q Consensus 256 il~L~vGDVI~L~~~~~~~v~ 276 (318) .-.|++||+|.+.....-|+| T Consensus 39 ~~~l~~GDii~i~~G~~iP~D 59 (124) T 2kij_A 39 VELVQRGDIIKVVPGGKFPVD 59 (124) T ss_dssp TTTCCTTCEEECCTTCBCSSC T ss_pred HHHCCCCCEEEEECCCEEEEC T ss_conf 899788989999128679755 No 11 >>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Archaeoglobus fulgidus} (A:) Probab=26.99 E-value=34 Score=13.62 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=10.9 Q ss_pred EEECHHHHHCCCCCCEEECC Q ss_conf 34309899457999789825 Q gi|254780687|r 249 KKTTLKDVVTLKIGQVIPFL 268 (318) Q Consensus 249 ~~l~l~dil~L~vGDVI~L~ 268 (318) +.++-.++.+|++||++-|+ T Consensus 21 tPl~~e~i~~L~vGD~V~Ls 40 (192) T 2isb_A 21 TPLVKDQILKLKVGDVVYIT 40 (192) T ss_dssp SSCCHHHHHHCCTTCEEEEE T ss_pred CCCCHHHHHHCCCCCEEEEE T ss_conf 99999999628999999996 No 12 >>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} (A:) Probab=26.28 E-value=35 Score=13.48 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=11.1 Q ss_pred HHHCCCCCCEEECCCC Q ss_conf 9945799978982578 Q gi|254780687|r 255 DVVTLKIGQVIPFLHR 270 (318) Q Consensus 255 dil~L~vGDVI~L~~~ 270 (318) .-.++++||.|.++.. T Consensus 31 kr~~ik~GD~I~F~~~ 46 (113) T 1xne_A 31 QLKDIKRGDKIIFNDL 46 (113) T ss_dssp TTTTCCTTCEEEETTT T ss_pred HHHHCCCCCEEEEECC T ss_conf 7861899999999301 No 13 >>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:1-86,A:171-268) Probab=25.35 E-value=37 Score=13.37 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=15.1 Q ss_pred HHHCCCCCCEEECCCCCCCEEEE Q ss_conf 99457999789825789973899 Q gi|254780687|r 255 DVVTLKIGQVIPFLHREKTCAIL 277 (318) Q Consensus 255 dil~L~vGDVI~L~~~~~~~v~v 277 (318) ...+|.+||+|.+.....-|++. T Consensus 102 ~~~~Lv~GDiV~i~~Gd~VPaDg 124 (184) T 2zxe_A 102 NAEFVVAGDLVEVKGGDRIPADL 124 (184) T ss_dssp EGGGCCTTCEEEEETTCBCCSEE T ss_pred EHHHCCCCCEEEECCCCEEEEEE T ss_conf 88998808889999989995017 No 14 >>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural protein; 2.10A {Enterobacteria phage MU} (A:1-96,A:180-202,A:275-379) Probab=24.01 E-value=39 Score=13.21 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=17.4 Q ss_pred CEEE-EEEEEEEEC-CEEEEEEEEEEHHHHHHH Q ss_conf 1899-999886667-813799998504775256 Q gi|254780687|r 179 EFVT-TINMNMTIE-NVASSFVLIIPQETLLKT 209 (318) Q Consensus 179 e~vi-~i~~~v~~~-~~~g~~~l~lP~~~l~~~ 209 (318) ++.+ .++|..+.. +....+.|.-|-+...+. T Consensus 156 ~~LI~~v~f~~~~~~Gt~T~L~L~~p~af~~~~ 188 (224) T 1wru_A 156 ELLVSKVTLILNDQDGLKTRVSLAPREGFLVPV 188 (224) T ss_dssp CEEEEEEEEEEETTTEEEEEEEEEEGGGGCCCC T ss_pred CEEEEEEEEEEECCCCCEEEEEEECCCCCCCCC T ss_conf 689999999998788629999998743466887 No 15 >>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:169-272) Probab=23.80 E-value=17 Score=15.57 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=13.9 Q ss_pred EEEEEEECHHHHHCCCCCCEEECCC Q ss_conf 9812343098994579997898257 Q gi|254780687|r 245 RINLKKTTLKDVVTLKIGQVIPFLH 269 (318) Q Consensus 245 ~Lg~~~l~l~dil~L~vGDVI~L~~ 269 (318) .+...++-.+|++.+++||.||-|- T Consensus 21 ~i~~~~lv~GDii~i~~G~~iPaDg 45 (104) T 3ixz_A 21 QINADQLVVGDLVEMKGGDRVPADI 45 (104) T ss_pred EEEHHHCCCCCEEEECCCCEEEEEE T ss_conf 9888998838889999989997558 No 16 >>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A (A:) Probab=23.49 E-value=40 Score=13.14 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=34.3 Q ss_pred HCCCCCCEEECCCCC-CCEEEEEECCEEEEEEEEEEEC---CEEEEEEEECCCCH--HHHHHHHHH Q ss_conf 457999789825789-9738999999999999998788---97899998425814--678888751 Q gi|254780687|r 257 VTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFD--QKSLKNFLH 316 (318) Q Consensus 257 l~L~vGDVI~L~~~~-~~~v~v~v~g~~~f~g~~G~~~---~~~AVrI~~~i~~~--~~~l~~~~~ 316 (318) -.|.+|+.|.|.-.. +..-.+.+.|+....-..+..+ ..++|+..+.-..+ ..+|..+++ T Consensus 40 ~~l~~G~~v~l~~~lp~~~~~i~~~g~V~w~~~~~~~~~~~~g~Gv~F~~~~~~~~~r~~I~~~~~ 105 (117) T 3cnr_A 40 KRYXLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAGIGVQFPDGPEGEAVRNKIETLLA 105 (117) T ss_dssp SCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCEEEEECCSSHHHHHHHHHHHHHHC T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 977899999999995378826888899999667877788887279996668834789999999975 No 17 >>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (E:139-210) Probab=20.98 E-value=45 Score=12.82 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.9 Q ss_pred CHHHHHCCCCCCEEECCCCC Q ss_conf 09899457999789825789 Q gi|254780687|r 252 TLKDVVTLKIGQVIPFLHRE 271 (318) Q Consensus 252 ~l~dil~L~vGDVI~L~~~~ 271 (318) |+..-+++++||||.+.++- T Consensus 40 Pv~r~~g~k~GdVvkI~R~S 59 (72) T 3h0g_E 40 PVARYLGLKRGEVVKIVRRS 59 (72) T ss_dssp HHHHHHTCCTTCEEEEECCC T ss_pred HHHHHHCCCCCCEEEEEECC T ss_conf 75672079899589999718 No 18 >>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} (A:74-126) Probab=20.02 E-value=47 Score=12.69 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=26.5 Q ss_pred HHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHH Q ss_conf 9999998872788876666--66565798999999999999 Q gi|254780687|r 103 LVITLLENLLGASHETIPQ--LYNRSLSTVEKKLAKRTIAQ 141 (318) Q Consensus 103 l~~~lid~~lGG~g~~~~~--~~~R~lT~iE~~l~~~i~~~ 141 (318) -.-.+++++|||+-...-. ...+.+|+-|..=++++++. T Consensus 9 es~~fl~r~f~Gs~~~lv~~f~~~~~LS~~eieELk~lld~ 49 (53) T 1sd4_A 9 TAKTFLNKLYGGDXKSLVLNFAKNEELNNKEIEELRDILND 49 (53) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 99999999958999999999984679999999999999998 Done!