HHsearch results for GI: 254780687 and protein with PDBid: 1o6a_A
>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=99.73 E-value=3.3e-17 Score=130.63 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=75.8
Q ss_pred HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf 99974080079999812343098994579997898257899738999999999999998788978999984258146788
Q gi|254780687|r 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 (318)
Q Consensus 232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l 311 (318)
.+.++++||+++|+||+++++++|+++|++||||+|+++.+++++++|||+++|+|++|.+|+++||||++.+.++++ +
T Consensus 13 l~~l~di~v~l~~~lg~~~l~l~dl~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i~~~~~-~ 91 (96)
T 1o6a_A 13 LELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKER-L 91 (96)
T ss_dssp HHHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHH-H
T ss_pred HHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHH-H
T ss_conf 466326608999999510856999846899999991798999789999999999999999999999999984194899-8
Q ss_pred HHH
Q ss_conf 887
Q gi|254780687|r 312 KNF 314 (318)
Q Consensus 312 ~~~ 314 (318)
+++
T Consensus 92 ~~l 94 (96)
T 1o6a_A 92 ELL 94 (96)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 764